Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0063 ATGGAACTTGGGAGGGCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCAAAAGGACAATCGCTTCTGTGCAGATTGTCGAGCTTGCGATCCTAAATGGGCGTCGGCTAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGTCTTGGTTCACATATATCAAAGGTGTTATCAGTGACTTTGGATGAATGGAGTGATGATGAAATTGATGCCATGATAGAAGTTGGAGGAAATTCTTCTGCAAATTCAATTTATGAAGCTTATATTCCTGATGATTATTCAAAACCTGGACCAGATGCCAGCCATGAACAACGCTCAAAATTTATTCGGTCCAAATATGAACTTCAAGACTTTCTGAAACCGAGTTTGAGAATTTTATCATCCAACTCCGACAAAAGCAATGTCCAAGCAAACTTTTCTTCAAAGATCATGAACAGTTTTCGTTCGAATAATTTGAAAAAATCAAAAGGTATGGTAGAGTTTGCTGGATTATTGAAGGTCAAAGTTATTAAAGGGACAAACTTAGCTATCAGGGATATGATGTCGAGCGATCCTTATGTAGTCTTGACTCTTGGACAACAGACTGCCCAGACAACTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGATGCTATCAGTACCTCAATGTTTTGGATCCTTAAAGTTGCAAGTATACGACTACGACACATTTTCAGCAGACGACATAATGGGAGAAGCCGAAATTGATCTCCAGCCCTTGATAACATCAGCAATGGCATTTGGAGATGCTGGACTGTTTTCGAACATGCAAATTGGAAAATGGCTGAAATCACACGATAACGCTCTCATAAGCGATAGCACAGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATGTCACTCAAGCTTCAGAATGTGGAATCAGGGGAACTAGATCTAGAGCTAGAATGGATGCCTCTTGAACAATAG 978 40.18 MELGRAGSGKRRLRDLLLQKDNRFCADCRACDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDDEIDAMIEVGGNSSANSIYEAYIPDDYSKPGPDASHEQRSKFIRSKYELQDFLKPSLRILSSNSDKSNVQANFSSKIMNSFRSNNLKKSKGMVEFAGLLKVKVIKGTNLAIRDMMSSDPYVVLTLGQQTAQTTVVRSNLNPVWNEELMLSVPQCFGSLKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGLFSNMQIGKWLKSHDNALISDSTVNIVDGKVKQEMSLKLQNVESGELDLELEWMPLEQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 385591 390023 - Sed0020705.1 Sed10g0063 726567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0063 325 Gene3D C2 domain 166 325 IPR035892 -
Sed10g0063 325 ProSiteProfiles C2 domain profile. 154 266 IPR000008 -
Sed10g0063 325 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096(InterPro)
Sed10g0063 325 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 325 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed10g0063 325 SMART arf_gap_3 10 132 IPR001164 GO:0005096(InterPro)
Sed10g0063 325 CDD C2_ArfGAP 169 312 - -
Sed10g0063 325 Gene3D Arf GTPase activating protein 4 130 IPR038508 -
Sed10g0063 325 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096(InterPro)
Sed10g0063 325 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096(InterPro)
Sed10g0063 325 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096(InterPro)
Sed10g0063 325 PRINTS C2 domain signature 209 222 IPR000008 -
Sed10g0063 325 PRINTS C2 domain signature 185 197 IPR000008 -
Sed10g0063 325 PRINTS C2 domain signature 230 238 IPR000008 -
Sed10g0063 325 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 167 325 - -
Sed10g0063 325 CDD ArfGap 13 119 - -
Sed10g0063 325 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Sed10g0063 325 FunFam Arf-GAP with dual PH domain-containing protein 1 5 133 - -
Sed10g0063 325 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 138 IPR001164 GO:0005096(InterPro)
Sed10g0063 325 SMART C2_3c 170 265 IPR000008 -
Sed10g0063 325 Pfam C2 domain 169 257 IPR000008 -
Sed10g0063 325 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 158 259 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2641 Sed-Chr4:38919551 Sed10g0063 Sed-Chr10:385591 6.90E-91 dispersed
Sed07g2303 Sed-Chr7:38818033 Sed10g0063 Sed-Chr10:385591 2.70E-90 dispersed
Sed08g2626 Sed-Chr8:38485567 Sed10g0063 Sed-Chr10:385591 9.20E-133 dispersed
Sed08g2627 Sed-Chr8:38485567 Sed10g0063 Sed-Chr10:385591 4.40E-90 dispersed
Sed08g2788 Sed-Chr8:39402581 Sed10g0063 Sed-Chr10:385591 3.10E-20 dispersed
Sed10g0063 Sed-Chr10:385591 Sed12g2119 Sed-Chr12:31868325 1.20E-33 dispersed
Sed01g1869 Sed-Chr1:13889692 Sed10g0063 Sed-Chr10:385591 5.10E-138 wgd
Sed10g0063 Sed-Chr10:385591 Sed14g1619 Sed-Chr14:24380671 4.70E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0063 K12486 - csv:101218116 582.408