Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0066 ATGACTTCTTCTGTCCATGATTATTCTGATAATCGTGAGGCTGATGAGCAGCAAAAGTACACTGAATCTCAGAATCATTCTTCGTCAGTCATAAATGGACTAAATCAACCAAGTGTCACAACCCCAAATCAGTATTTAACACCTCGACAAGCTGGAGCAGGACATGCTTTGGCACCCCCTGCCTTTCCATATCCAGATCCTTATTACAGAAGCATCTTTTCTCCTTATGATGCTCAACCGTATCCTCCCCAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCATTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGAATTTTACGACGTCGACAGTCTCGTGCTAAAGCTGAATCCGAAAATAAAGCTCTGAAGTGTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGAAGAGCTAGGGGCTGTGGTGGACGGTTTCTCAAATCAAATGAAAATGAGAATCAAAATGAAGTGGCATCAGGTGATAAATCAAAGTCCAATATTAATCTGAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGGACTGA 615 42.44 MTSSVHDYSDNREADEQQKYTESQNHSSSVINGLNQPSVTTPNQYLTPRQAGAGHALAPPAFPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKCRKPYLHESRHLHALRRARGCGGRFLKSNENENQNEVASGDKSKSNINLNSDRSDLASSED 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 395553 407081 + Sed0018166.1 Sed10g0066 726570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0066 204 MobiDBLite consensus disorder prediction 1 53 - -
Sed10g0066 204 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed10g0066 204 Gene3D - 111 173 - -
Sed10g0066 204 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 MobiDBLite consensus disorder prediction 170 197 - -
Sed10g0066 204 MobiDBLite consensus disorder prediction 167 204 - -
Sed10g0066 204 MobiDBLite consensus disorder prediction 21 48 - -
Sed10g0066 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 195 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0066 Sed-Chr10:395553 Sed12g1580 Sed-Chr12:25803734 1.50E-26 dispersed
Sed10g0066 Sed-Chr10:395553 Sed10g0067 Sed-Chr10:395872 4.90E-91 tandem
Sed10g0066 Sed-Chr10:395553 Sed14g1617 Sed-Chr14:24365328 4.30E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39643 PF02045 CBFB_NFYA 3.30E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0066 K08064 - csv:101205549 350.517