Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0066 ATGACTTCTTCTGTCCATGATTATTCTGATAATCGTGAGGCTGATGAGCAGCAAAAGTACACTGAATCTCAGAATCATTCTTCGTCAGTCATAAATGGACTAAATCAACCAAGTGTCACAACCCCAAATCAGTATTTAACACCTCGACAAGCTGGAGCAGGACATGCTTTGGCACCCCCTGCCTTTCCATATCCAGATCCTTATTACAGAAGCATCTTTTCTCCTTATGATGCTCAACCGTATCCTCCCCAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCATTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGAATTTTACGACGTCGACAGTCTCGTGCTAAAGCTGAATCCGAAAATAAAGCTCTGAAGTGTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGAAGAGCTAGGGGCTGTGGTGGACGGTTTCTCAAATCAAATGAAAATGAGAATCAAAATGAAGTGGCATCAGGTGATAAATCAAAGTCCAATATTAATCTGAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGGACTGA 615 42.44 MTSSVHDYSDNREADEQQKYTESQNHSSSVINGLNQPSVTTPNQYLTPRQAGAGHALAPPAFPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKCRKPYLHESRHLHALRRARGCGGRFLKSNENENQNEVASGDKSKSNINLNSDRSDLASSED 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 395553 407081 + Sed0018166.1 Sed10g0066 726570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0066 204 MobiDBLite consensus disorder prediction 1 53 - -
Sed10g0066 204 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed10g0066 204 Gene3D - 111 173 - -
Sed10g0066 204 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0066 204 MobiDBLite consensus disorder prediction 170 197 - -
Sed10g0066 204 MobiDBLite consensus disorder prediction 167 204 - -
Sed10g0066 204 MobiDBLite consensus disorder prediction 21 48 - -
Sed10g0066 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 195 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0066 K08064 - - csv:101205549 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0066 Sed-Chr10:395553 Sed12g1580 Sed-Chr12:25803734 1.50E-26 dispersed
Sed10g0066 Sed-Chr10:395553 Sed10g0067 Sed-Chr10:395872 4.90E-91 tandem
Sed10g0066 Sed-Chr10:395553 Sed14g1617 Sed-Chr14:24365328 4.30E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g3289 . 1 231 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.0 2.4e-56 216.9
Sed01g3275 . 1 219 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.8 6.0e-52 202.2
Sed12g1580 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 3.2e-46 183.3
Sed01g3275 . 92 232 CCAAT-HAP2 Transcription Factor Family AT3G20910 62.7 1.7e-39 161.0
Sed14g1617 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.2 1.2e-46 184.1
Sed10g0066 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
Sed10g0067 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39643 PF02045 CBFB_NFYA 3.30E-26 No_clan Sed TF