Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0068 ATGGCTCTTGTTATGCACAAAGGCTCATCAAACAAAGAGATGGATACAGGAAAATATGTGAGGTATACACCTGAACAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCTAAACCAAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTTTCTAATATTGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGTAGATGCCGGGAGAAGCAGAGGAAGGAATCGTCTCGCCTCCAGAGCGTAAATCGAAAGTTATCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCCCATTTGGTGTATGATAATGGATATATGCGCCAGCAACTGCATAGTGCATCTGGGACTACAGACAATAGCTGTGAGTCTGTAGTCGTGAGCGGTCAGCCCCAACAACAGCAAAACCCAAATCCTCAGCATCCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTTGCGTTAGCTGAGGAGACCATGGCAGAGTTCCTTTCCAAGGCTACCGGAACTGCTGTCGACTGGGTTCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCACGAGCCTGTGGTCTTATTAGTCTAGAGCCAACGAAGGTTGCTGAAATTCTAAAAGATCGCCTTTCATGGTATCGCGACTGTCGCTGTATTAATGTTTTAAGTGTAATCCCTACTGGAAATGGGGGAACAATAGAGCTCATATACGTGCAGACTTATGCTCCAACAACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTATAGTGGTCTGTGAGAGGTCATTAACTTCTTCAAGTGGTGGCCCAGCTGGGCCTCCACCATCTACTTTTGTAAGAGCTGAAATGCTTCCTAGTGGCTATTTAATACGAGCATGCGATGGCGGTGGATCGATTATTCACATTGTTGATCACGTTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAATCATCCAAGATCCTTGCACAGAAAATGACAATTTCTGCATTGCGTCACATTCGACAAATTGCTCAGGAGACAAATGGAGAGATTCAGTATAGTGGGGGACGTCAACCAGCTGTATTACGAGCGTTTAGTCAGAAACTCTGCAGAGGTTTCAATGATGCGGTGAATGGATTTGCGGATGACGGTTGGTCACCTAGGAGCAGTGATGGATTGGAGGACGTGACAATTGTGATAAACTCATCAGCAAACAAGTTCCCTGGATCCCAGTATAACACGTCTATGTATCCCTCTTTTGGCGGAGGAGTGATGTGTGCAAAAGCGTCGATGTTGCTTCAGAATGTTCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCCTACTCTGCGGCTAGTTTGAAAGCCAGTCCATATGCTGTCCCATGTGCAAGGCCTGGCGGCTTCCCGAGCAGCCAGGTTATTTTGCCACTTGCTCATACAGTGGAGCATGAGGAGTTTCTGGAGGTGGTTCGGCTGGAGGGCCTTGCATTCTCCCCCGAAGACGTCGCTTTGGCTGGACAAGATATGTACTTATTGCAGCTATGTAGTGGGGTTGATGAGAATGCAGTTGGGGCTTGTGCTCAGCTTGTGTTTGCACCTATAGACGAATCTTTTGCGGATGATGCTCCTCTACTTCCTTCCGGGTTTCGTATCATACCATTGGATCCGAAAACGGATCAACCTACCTCTGCTCGAACATTGGATTTGGCTTCTACTCTTGAAGTTGGTGGCAATGGTGCACGTTCTGCTGGCGAAACTGATTCAAGCAGCTACAATCATAGGTCAGTCTTGACTATTGCCTTCCAGTTCACTTATGAGAATCACTCGCGGGAAAATGTGGCTACTATGGCTCGACAGTACGTTCGTAGTGTCGTGGGGTCTGTTCAGAGGGTTGCCATGGCCATTACCCCATCACGGTTGAGCTCCAACATAGGACTAAAGCCCCTTCCTGGTTCACCTGAAGCTCTTACGTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGCTGAGCTCCTTCAAGCCGATTCACAGTCTGGGGATGCCATGTTGAAGCAGCTCTGGCACCACTCAGATGCAATCATGTGTTGCTCCATTAAGGCCAACGCATCTGCGGTGTTCACCTTTGCTAACCAGGCTGGTTTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGACATAATGCTCGACAAAATTCTCGATGAAGCAGGTCGTAAGCTTCTATGTTCCGAGTTCCCCCAAATAACACAGCAGGGATTTTCCAATCTGCCGTCGGGTATTTGCGTATCCAGTATGGGTCGACCCATTTCTTACGAGCAAGCAGTGGCCTGGAAGGTTCTAGATGATGATGATTCCAATCACTGTCTAGCTTTTATGTTCATAAACTGGTCTTTTGTGTGA 2541 47.26 MALVMHKGSSNKEMDTGKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYDNGYMRQQLHSASGTTDNSCESVVVSGQPQQQQNPNPQHPNRDVNNPAGLLALAEETMAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLISLEPTKVAEILKDRLSWYRDCRCINVLSVIPTGNGGTIELIYVQTYAPTTLAAARDFWTMRYTTSLEDGSIVVCERSLTSSSGGPAGPPPSTFVRAEMLPSGYLIRACDGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTISALRHIRQIAQETNGEIQYSGGRQPAVLRAFSQKLCRGFNDAVNGFADDGWSPRSSDGLEDVTIVINSSANKFPGSQYNTSMYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGLAFSPEDVALAGQDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRIIPLDPKTDQPTSARTLDLASTLEVGGNGARSAGETDSSSYNHRSVLTIAFQFTYENHSRENVATMARQYVRSVVGSVQRVAMAITPSRLSSNIGLKPLPGSPEALTLARWICRSYRIHVGAELLQADSQSGDAMLKQLWHHSDAIMCCSIKANASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKLLCSEFPQITQQGFSNLPSGICVSSMGRPISYEQAVAWKVLDDDDSNHCLAFMFINWSFV 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 421112 427420 + Sed0006144.1 Sed10g0068 726572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0068 846 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Sed10g0068 846 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Sed10g0068 846 MobiDBLite consensus disorder prediction 123 156 - -
Sed10g0068 846 Pfam MEKHLA domain 701 845 IPR013978 -
Sed10g0068 846 SMART START_1 165 375 IPR002913 GO:0008289(InterPro)
Sed10g0068 846 Gene3D - 9 85 - -
Sed10g0068 846 Gene3D - 199 384 IPR023393 -
Sed10g0068 846 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289(InterPro)
Sed10g0068 846 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Sed10g0068 846 CDD START_ArGLABRA2_like 160 376 - -
Sed10g0068 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 846 IPR044830 GO:0003700(InterPro)
Sed10g0068 846 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Sed10g0068 846 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Sed10g0068 846 SUPERFAMILY Bet v1-like 166 377 - -
Sed10g0068 846 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Sed10g0068 846 CDD bZIP 70 109 - -
Sed10g0068 846 MobiDBLite consensus disorder prediction 123 159 - -
Sed10g0068 846 Coils Coil 83 107 - -
Sed10g0068 846 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2628 Sed-Chr8:38501185 Sed10g0068 Sed-Chr10:421112 0.00E+00 dispersed
Sed10g0068 Sed-Chr10:421112 Sed14g1616 Sed-Chr14:24352331 0.00E+00 dispersed
Sed01g1868 Sed-Chr1:13866318 Sed10g0068 Sed-Chr10:421112 0.00E+00 wgd
Sed10g0068 Sed-Chr10:421112 Sed14g1615 Sed-Chr14:24352331 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39645 PF01852 START 4.70E-48 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0068 K09338 - csv:101210154 1584.31