Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0142 ATGGCTTCCCTTCTCGCTCTCCTTTCGCCGCTCCTTCCGTTCCTGGCCTCCGCCGTGTTCCTCATCATCTTCCTCGAGCAGATCTCCTACTTGAAGAAGAAACGCTCCGTTCCGGGCCCGCCTCTCGTCCTCCCCTTCGTCGGCAACTGCGTTCCTCTGGTTCGAAACCCTGCCAGATTCTGGGAAATCCAAGCTTCCATGGCCAAATCCTCCGGCTACGGCTTCTCCGTCAACTACATTGCCGGCAACTTCATCGTCTTCATCCGCGACACCGAGCTCTCTCACAAGATCTTCGCCAATGTACGTTCCGACGCCATGAATCTCGTCGGCCATCCCTTCGGTAAGAAGCTGTTCGGCGAGGATAATCTGATTTACATGTTAGGTCAAAAGCATAAGGATCTCCGCCGCCGGATCGCTCCTAATTTCACGCCGAAAGCGCTCTGCACCTACACCGCGCTTCAGCAGATCATCATTCTCAAGCACTTGAAGCTTTGGGTACAGAAATCGAAGGAATCGTCGCCGAATCCGATTCCGTTGAGGTTTCTCGCTCGAGATCTGAACCTTGAAGCCTCGCAGATGGTGTTCGTTGGACCGCATTTAGGCGAAGAGATTCGAGAGAAGTTCAGAATCGATTACAACTTGTTCAACGTCGGATTGATGAAGCTTCCGATAGATCTGCCTGGAACTGGTTTCAGAAACGCGCGGCTCGCCGTCGATCGGCTGGTGGAGGTTCTCTCCGACTGCGCGGCGAAGAGCAAGGCGAAGATGAACAGAGAAGAGGAGCCGTCGTGTTTGATTGATTTCTGGATGCAGGACACCGTGAAGGAACTCGCCGACGCGGCGGCGGCCGGGTTGGCGGAGCCGGTCCACACCTCCAACTTCGAGCTCGGACTGTACCTCTTCGATTTCCTCTTCGCCGCTCAAGACGCTTCAACTTCGTCGCTGCTATGGGCGGTGAGTCTCCTCGATTTTCACCCCGAAGTCGTCGGAAAAGTCCGTGAAGAAGTCGAATCGATCTGGTCGCCGGAATCCGACGCACTGATCTCATCGGAGCAGCTTCTGGAAATGAAGTACACTCAGGCGGTGGCGCGTGAGGTCGTTAGGCACCGCGCGCCGGCGACGGTGGTGCCGCACGTGGCGGCGGCGGATTTCCCGTTGACTGATTCATACAAAATCCCCAAAGGAGCCATCGTGTTCCCATCCGCGTACGAGTCGTGCCAGCAAGGGTTCGTCGAACCGGAGCGGTTCGACCCGGATCGGTTCTCGGAGGACCGGCAGGAGGACCGGTTTTTCAAAAGGAACTTTCTGGCTTTCGGGGCTGGGTCCCACCAGTGTGTAGGGCAGCGCTACGCATTGAACCAACTGGTGCTTTTCATCGCAATGTTTTGTACGTTGCTTGATTTCCAGAGGCACAGATCGGACGGCTGCGATGAAATCGCCTTTAATCCAACCATCTGTCCCAAAGATGATTGCATGGTCTCTATCTGTAGCCGTTGCTCTCGATTTCCCAATCTCTCGGTTCAATAA 1527 55.34 MASLLALLSPLLPFLASAVFLIIFLEQISYLKKKRSVPGPPLVLPFVGNCVPLVRNPARFWEIQASMAKSSGYGFSVNYIAGNFIVFIRDTELSHKIFANVRSDAMNLVGHPFGKKLFGEDNLIYMLGQKHKDLRRRIAPNFTPKALCTYTALQQIIILKHLKLWVQKSKESSPNPIPLRFLARDLNLEASQMVFVGPHLGEEIREKFRIDYNLFNVGLMKLPIDLPGTGFRNARLAVDRLVEVLSDCAAKSKAKMNREEEPSCLIDFWMQDTVKELADAAAAGLAEPVHTSNFELGLYLFDFLFAAQDASTSSLLWAVSLLDFHPEVVGKVREEVESIWSPESDALISSEQLLEMKYTQAVAREVVRHRAPATVVPHVAAADFPLTDSYKIPKGAIVFPSAYESCQQGFVEPERFDPDRFSEDRQEDRFFKRNFLAFGAGSHQCVGQRYALNQLVLFIAMFCTLLDFQRHRSDGCDEIAFNPTICPKDDCMVSICSRCSRFPNLSVQ 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 906840 908872 + Sed0018301.1 Sed10g0142 726646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0142 508 Gene3D Cytochrome P450 28 501 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g0142 508 Pfam Cytochrome P450 38 463 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g0142 508 FunFam Cytochrome P450 61 27 498 - -
Sed10g0142 508 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g0142 508 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g0142 508 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g0142 508 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed10g0142 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed10g0142 508 CDD CYP61_CYP710 74 491 - -
Sed10g0142 508 PANTHER CYTOCHROME P450 26 38 464 - GO:0016125(PANTHER)|GO:0016491(PANTHER)
Sed10g0142 508 SUPERFAMILY Cytochrome P450 30 498 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0142 Sed-Chr10:906840 Sed13g1743 Sed-Chr13:22400999 3.50E-13 dispersed
Sed10g0142 Sed-Chr10:906840 Sed13g1742 Sed-Chr13:22400999 2.60E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0142 K09832 - csv:101221194 879.011