Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g0145 | ATGGATGTTGGTGAAGAAATTAGGGCAGCTCACAAGCGAGATTTCTTGGAATTCCTCGAACAGGATGTTGGGAAAGGAATTTACATGGATGAGATCAAAGCCATGATCAATCATAAGCGATATCGCCTTATAATCAACATTTCCGATCTTCATTCCTTCAGAGATCTCGGTCCCAGGGTGCTCAGGAATCCGAGTGAGTACATTCAGGCGTTCTGCGATGCAGTCACCGAAACTGCTCGCAGTATTGATCCAAAATATCTCAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAAGGCCCCTTCGTTTCTCGCTGCATCACTCCCAGGGAACTTCTCTCTCAGTTCATTGGCTCCATGGTCTGTGTCGAGGGCATCGTTACCAAATGTTCTCTAGTTAGACCGAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACTGGGGGTTTTACCAGTCGTGAATACCGTGACATTACGTCCAACATGGGCTTGCCTACAGGATCTGTGTATCCCACCAGGGACGAAAATGGAAACTTGTTGGTTACTGAGTATGGGTTGTGTAGATATAAAGATCATCAGACCTTATCGATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTCGAGGATGACTTAGTTGATTGTTGCAAGCCAGGTGATCGCGTTGCAATTGTAGGAATGTATAAAGCTCTTCCAGGAAAAAGCAAGGGAAGCGTGAATGGAGTGTTCAGAACTGTTCTTGTAGCTAACAATGTCTCACTGCTAAACAAAGAAGCCAATGCACCAATTTACAGCCCCGAGGATTTGAAGAATATTAAAAAGATAGCTGAAAGAGATGACACATTTGACCTTCTCGGGAATTCTCTTGCACCTTCCATATATGGACATTCATGGATTAAAAAAGCAGTGATACTATTGATGCTCGGTGGAGTTGAGAAGAACTTGAAGAACGGCACCCACTTGAGAGGTGATATCAACATGATGATGGTTGGTGATCCCTCAGTTGCCAAGTCTCAACTTTTAAGGGCTATCATGAATATTGCACCTTTAGCAATATCTACAACTGGTCGTGGTTCATCTGGCGTTGGGTTAACTGCTGCTGTTACATCAGATCAGGAGACAGGCGAAAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATAGAGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAACGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCTCTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTATGATCGTTCATTGACACCAACAAAGAATATAGGCCTTCCAGACTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCAGAACATGTGTTGCGTATGCATCGGTTTCGTTCTGTACTTGATGGAGGTGAGGCTGGGGGCTCAATGTATGGAAGAGAGGATGAAGCTGAAGCTGACACTTCTGTCTTTGTTAAGTATAATCGAATGCTTCATGGGAAGAAGACAGAACGTGGTCGGAAACGCGATACTCTCACCATCAAGTTTCTTAAGAAATATATTCATTATGCTAAGCATAGGATACAACCTGACTTAACTGATGAGGCATCTGAGCACATTGCAACAACTTATGCAGAACTTAGAAATTCAACTTCAAGTGCGAAGACTGGAGGAACTCTTCCAATTACTGCCAGAACCCTTGAAACCATCATACGACTCTCAACTGCTCATGCAAAATTGAAGTTGAGTAGAAAGGTTACAAAATCTGATGTCGAAGCTGCCTTGAAAGTTCTTTATTTTGCCATTTATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAAGGAGAAAGAATTGGAAAAAAAGCGCAGAGCTGAACATCAAACAGTGGAAGATGATAGACCAGAACGTAACACCAGAAGAAGAGAGGAGAGCTCAAGGACAGACACCATGGAAATCGATGATCCTCCTACTGAACCTGTAATTGATCTGTCTGCAGAAAGAATGGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACCTGGATCTTATATCTATTGCAGACATTGAAAATATCGTCAATGCTTCAACAGATACACGTTACACGTCAGCTGAAATAATGTCGCTCTTGCAGAGACTCCAAGATGATAACAGGGTAATGATAGCTGATGGCGTGGTGCATATGATATCATGA | 2322 | 42.94 | MDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRYRLIINISDLHSFRDLGPRVLRNPSEYIQAFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRCITPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDENGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGMYKALPGKSKGSVNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRFRSVLDGGEAGGSMYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEHIATTYAELRNSTSSAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVTKSDVEAALKVLYFAIYHKELTEMEEREQEKEKELEKKRRAEHQTVEDDRPERNTRRREESSRTDTMEIDDPPTEPVIDLSAERMEAFNSLFGQHMRANHLDLISIADIENIVNASTDTRYTSAEIMSLLQRLQDDNRVMIADGVVHMIS | 773 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 920732 | 926600 | - | Sed0015619.1 | Sed10g0145 | 726649 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g0145 | 773 | Pfam | MCM OB domain | 109 | 239 | IPR033762 | - | |
| Sed10g0145 | 773 | Coils | Coil | 637 | 667 | - | - | |
| Sed10g0145 | 773 | ProSitePatterns | MCM family signature. | 398 | 406 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Sed10g0145 | 773 | Gene3D | - | 5 | 99 | - | - | |
| Sed10g0145 | 773 | ProSiteProfiles | MCM family domain profile. | 289 | 495 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0145 | 773 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 299 | 654 | IPR027417 | - | |
| Sed10g0145 | 773 | CDD | MCM3 | 292 | 638 | - | - | |
| Sed10g0145 | 773 | Gene3D | - | 271 | 661 | IPR027417 | - | |
| Sed10g0145 | 773 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 5 | 720 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Sed10g0145 | 773 | SMART | mcm | 104 | 640 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0145 | 773 | Pfam | MCM N-terminal domain | 12 | 98 | IPR027925 | - | |
| Sed10g0145 | 773 | Pfam | MCM AAA-lid domain | 553 | 635 | IPR041562 | - | |
| Sed10g0145 | 773 | SUPERFAMILY | Nucleic acid-binding proteins | 13 | 258 | IPR012340 | - | |
| Sed10g0145 | 773 | Pfam | MCM P-loop domain | 277 | 499 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0145 | 773 | Gene3D | - | 109 | 239 | IPR012340 | - | |
| Sed10g0145 | 773 | MobiDBLite | consensus disorder prediction | 650 | 693 | - | - | |
| Sed10g0145 | 773 | MobiDBLite | consensus disorder prediction | 650 | 697 | - | - | |
| Sed10g0145 | 773 | FunFam | DNA helicase | 5 | 104 | - | - | |
| Sed10g0145 | 773 | FunFam | DNA helicase | 135 | 189 | - | - | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 491 | 501 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 627 | 642 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 181 | 195 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 207 | 219 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 458 | 468 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0145 | 773 | Gene3D | - | 135 | 189 | - | - | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 330 | 345 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 442 | 454 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 469 | 477 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 418 | 431 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0145 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 390 | 404 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0145 | 773 | SMART | AAA_5 | 331 | 484 | IPR003593 | GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g0570 | Sed-Chr7:4319928 | Sed10g0145 | Sed-Chr10:920732 | 7.60E-94 | dispersed | |
| Sed10g0145 | Sed-Chr10:920732 | Sed11g0172 | Sed-Chr11:1521362 | 8.10E-86 | dispersed | |
| Sed10g0145 | Sed-Chr10:920732 | Sed10g0146 | Sed-Chr10:920732 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g0145 | K02541 | - | csv:101210889 | 1400.57 |