Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g0146 | ATGGTCTGTGTCGAGGGCATCGTTACCAAATGTTCTCTAGTTAGACCGAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACTGGGGGTTTTACCAGTCGTGAATACCGTGACATTACGTCCAACATGGGCTTGCCTACAGGATCTGTGTATCCCACCAGGGACGAAAATGGAAACTTGTTGGTTACTGAGTATGGGTTGTGTAGATATAAAGATCATCAGACCTTATCGATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTCGAGGATGACTTAGTTGATTGTTGCAAGCCAGGTGATCGCGTTGCAATTGTAGGAATGTATAAAGCTCTTCCAGGAAAAAGCAAGGGAAGCGTGAATGGAGTGTTCAGAACTGTTCTTGTAGCTAACAATGTCTCACTGCTAAACAAAGAAGCCAATGCACCAATTTACAGCCCCGAGGATTTGAAGAATATTAAAAAGATAGCTGAAAGAGATGACACATTTGACCTTCTCGGGAATTCTCTTGCACCTTCCATATATGGACATTCATGGATTAAAAAAGCAGTGATACTATTGATGCTCGGTGGAGTTGAGAAGAACTTGAAGAACGGCACCCACTTGAGAGGTGATATCAACATGATGATGGTTGGTGATCCCTCAGTTGCCAAGTCTCAACTTTTAAGGGCTATCATGAATATTGCACCTTTAGCAATATCTACAACTGGTCGTGGTTCATCTGGCGTTGGGTTAACTGCTGCTGTTACATCAGATCAGGAGACAGGCGAAAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATAGAGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAACGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCTCTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTATGATCGTTCATTGACACCAACAAAGAATATAGGCCTTCCAGACTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCAGAACATGTGTTGCGTATGCATCGGTTTCGTTCTGTACTTGATGGAGGTGAGGCTGGGGGCTCAATGTATGGAAGAGAGGATGAAGCTGAAGCTGACACTTCTGTCTTTGTTAAGTATAATCGAATGCTTCATGGGAAGAAGACAGAACGTGGTCGGAAACGCGATACTCTCACCATCAAGTTTCTTAAGAAATATATTCATTATGCTAAGCATAGGATACAACCTGACTTAACTGATGAGGCATCTGAGCACATTGCAACAACTTATGCAGAACTTAGAAATTCAACTTCAAGTGCGAAGACTGGAGGAACTCTTCCAATTACTGCCAGAACCCTTGAAACCATCATACGACTCTCAACTGCTCATGCAAAATTGAAGTTGAGTAGAAAGGTTACAAAATCTGATGTCGAAGCTGCCTTGAAAGTTCTTTATTTTGCCATTTATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAAGGAGAAAGAATTGGAAAAAAAGCGCAGAGCTGAACATCAAACAGTGGAAGATGATAGACCAGAACGTAACACCAGAAGAAGAGAGGAGAGCTCAAGGACAGACACCATGGAAATCGATGATCCTCCTACTGAACCTGTAATTGATCTGTCTGCAGAAAGAATGGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACCTGGATCTTATATCTATTGCAGACATTGAAAATATCGTCAATGCTTCAACAGATACACGTTACACGTCAGCTGAAATAATGTCGCTCTTGCAGAGACTCCAAGATGATAACAGGGTAATGATAGCTGATGGCGTGGTGCATATGATATCATGA | 1968 | 42.28 | MVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDENGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGMYKALPGKSKGSVNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRFRSVLDGGEAGGSMYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEHIATTYAELRNSTSSAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVTKSDVEAALKVLYFAIYHKELTEMEEREQEKEKELEKKRRAEHQTVEDDRPERNTRRREESSRTDTMEIDDPPTEPVIDLSAERMEAFNSLFGQHMRANHLDLISIADIENIVNASTDTRYTSAEIMSLLQRLQDDNRVMIADGVVHMIS | 655 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 920732 | 926600 | - | Sed0015619.2 | Sed10g0146 | 726650 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 373 | 383 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 509 | 524 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 63 | 77 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 340 | 350 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 89 | 101 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed10g0146 | 655 | SMART | mcm | 1 | 522 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0146 | 655 | MobiDBLite | consensus disorder prediction | 532 | 579 | - | - | |
| Sed10g0146 | 655 | Pfam | MCM P-loop domain | 159 | 381 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0146 | 655 | FunFam | DNA helicase | 17 | 71 | - | - | |
| Sed10g0146 | 655 | Pfam | MCM OB domain | 1 | 121 | IPR033762 | - | |
| Sed10g0146 | 655 | Gene3D | - | 1 | 121 | IPR012340 | - | |
| Sed10g0146 | 655 | ProSitePatterns | MCM family signature. | 280 | 288 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Sed10g0146 | 655 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 140 | IPR012340 | - | |
| Sed10g0146 | 655 | SMART | AAA_5 | 213 | 366 | IPR003593 | GO:0016887(InterPro) | |
| Sed10g0146 | 655 | Gene3D | - | 153 | 543 | IPR027417 | - | |
| Sed10g0146 | 655 | Coils | Coil | 519 | 549 | - | - | |
| Sed10g0146 | 655 | Gene3D | - | 17 | 71 | - | - | |
| Sed10g0146 | 655 | Pfam | MCM AAA-lid domain | 435 | 517 | IPR041562 | - | |
| Sed10g0146 | 655 | CDD | MCM3 | 174 | 520 | - | - | |
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 351 | 359 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 272 | 286 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 300 | 313 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 324 | 336 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0146 | 655 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 212 | 227 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed10g0146 | 655 | MobiDBLite | consensus disorder prediction | 532 | 575 | - | - | |
| Sed10g0146 | 655 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 181 | 536 | IPR027417 | - | |
| Sed10g0146 | 655 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 1 | 602 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Sed10g0146 | 655 | ProSiteProfiles | MCM family domain profile. | 171 | 377 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g0146 | Sed-Chr10:920732 | Sed11g0172 | Sed-Chr11:1521362 | 6.00E-82 | dispersed | |
| Sed10g0145 | Sed-Chr10:920732 | Sed10g0146 | Sed-Chr10:920732 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g0146 | K02541 | - | csv:101210889 | 1179.85 |