Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0155 ATGGCTGCTTCAACCATGGCTCTTTCCTCCCCATCTTTGGCCGGCCAGGCCATCAAGCTTTCCCCCAACTCCTCTGAGCTTCAGAGCAATGGAAGGGTCAGCATGAGGAAGACCGCCGGCAAGCCAGCTTCCTCCTCTGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGGCACCGTCCTACCTGACTGGAGAATTCCCCGGCGACTACGGTTGGGACACCGCTGGACTTTCAGCCGATCCCGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCCTTGGGCTGTGTCTTCCCCGAGCTGTTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGCTCTCAGATCTTCAGCGAGGGAGGACTTGACTATTTGGGCAACTCGAGCTTGGTTCATGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGCTCATGGGTGCCGTCGAGGGCTACCGTATTGCTGGCGGTCCGCTCGGGGAGATCACCGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCTTTTGCTGAGCTGAAGGTGAAGGAGCTAAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAAGCTATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGTCCTATGCCACCAACTTTGTTCCTGGAAAGTGA 801 56.05 MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 959200 960000 - Sed0026288.1 Sed10g0155 726659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0155 266 MobiDBLite consensus disorder prediction 19 45 - -
Sed10g0155 266 Pfam Chlorophyll A-B binding protein 66 233 IPR022796 -
Sed10g0155 266 SUPERFAMILY Chlorophyll a-b binding protein 49 263 - -
Sed10g0155 266 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 266 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed10g0155 266 FunFam Chlorophyll a-b binding protein, chloroplastic 57 259 - -
Sed10g0155 266 MobiDBLite consensus disorder prediction 19 48 - -
Sed10g0155 266 Gene3D Chlorophyll a/b binding protein domain 57 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1288 Sed-Chr5:24810107 Sed10g0155 Sed-Chr10:959200 1.50E-123 dispersed
Sed10g0155 Sed-Chr10:959200 Sed10g0157 Sed-Chr10:965751 1.30E-152 dispersed
Sed10g0155 Sed-Chr10:959200 Sed10g0156 Sed-Chr10:961812 3.20E-151 tandem
Sed01g2226 Sed-Chr1:16699408 Sed10g0155 Sed-Chr10:959200 2.00E-140 transposed
Sed10g1659 Sed-Chr10:33259814 Sed10g0155 Sed-Chr10:959200 5.50E-60 transposed
Sed10g0155 Sed-Chr10:959200 Sed14g1562 Sed-Chr14:23798355 5.70E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0155 K08912 - csv:101213845 513.457