Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0156 ATGGCTGCCTCAACAATGGCTCTTTCCTCCCCATCTTTGGCCGGCCAGGCCGTCAAGCTCTCCCCCAACTCCTCTGAGCTTCAGAGCAATGGAAGAGTCAGCATGAGGAAGACCGCCGGCAAGAAGCCAGCTTCCTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGGCACCGTCCTACCTGACTGGAGAATTCCCCGGCGACTACGGTTGGGACACCGCTGGACTTTCAGCCGATCCCGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCCTTGGGCTGTGTCTTCCCCGAGCTGTTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCGGTGTGGTTCAAGGCTGGCTCTCAGATCTTCAGCGAGGGAGGACTTGACTATTTGGGCAACTCGAGCTTGGTTCATGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGCTCATGGGTGCCGTCGAGGGCTACCGTATTGCTGGCGGTCCGCTCGGGGAGATCACCGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCTTTTGCTGAGCTGAAGGTGAAGGAGCTAAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAAGCCATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCAGACCACCTTGCTGACCCAGTGAACAACAACGCTTGGTCCTACGCCACAAACTTCGTCCCTGGAAAGTGA 804 56.97 MAASTMALSSPSLAGQAVKLSPNSSELQSNGRVSMRKTAGKKPASSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 961812 963087 - Sed0011588.1 Sed10g0156 726660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0156 267 MobiDBLite consensus disorder prediction 1 49 - -
Sed10g0156 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed10g0156 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Sed10g0156 267 MobiDBLite consensus disorder prediction 1 45 - -
Sed10g0156 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
Sed10g0156 267 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Sed10g0156 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1212 Sed-Chr6:35380465 Sed10g0156 Sed-Chr10:961812 1.50E-126 dispersed
Sed10g0156 Sed-Chr10:961812 Sed14g1562 Sed-Chr14:23798355 8.00E-150 dispersed
Sed10g0155 Sed-Chr10:959200 Sed10g0156 Sed-Chr10:961812 3.20E-151 tandem
Sed10g0156 Sed-Chr10:961812 Sed10g0157 Sed-Chr10:965751 1.10E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0156 K08912 - csv:101213845 514.612