Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0156 | ATGGCTGCCTCAACAATGGCTCTTTCCTCCCCATCTTTGGCCGGCCAGGCCGTCAAGCTCTCCCCCAACTCCTCTGAGCTTCAGAGCAATGGAAGAGTCAGCATGAGGAAGACCGCCGGCAAGAAGCCAGCTTCCTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGGCACCGTCCTACCTGACTGGAGAATTCCCCGGCGACTACGGTTGGGACACCGCTGGACTTTCAGCCGATCCCGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCCTTGGGCTGTGTCTTCCCCGAGCTGTTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCGGTGTGGTTCAAGGCTGGCTCTCAGATCTTCAGCGAGGGAGGACTTGACTATTTGGGCAACTCGAGCTTGGTTCATGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGCTCATGGGTGCCGTCGAGGGCTACCGTATTGCTGGCGGTCCGCTCGGGGAGATCACCGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCTTTTGCTGAGCTGAAGGTGAAGGAGCTAAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAAGCCATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCAGACCACCTTGCTGACCCAGTGAACAACAACGCTTGGTCCTACGCCACAAACTTCGTCCCTGGAAAGTGA | 804 | 56.97 | MAASTMALSSPSLAGQAVKLSPNSSELQSNGRVSMRKTAGKKPASSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 961812 | 963087 | - | Sed0011588.1 | Sed10g0156 | 726660 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0156 | 267 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Sed10g0156 | 267 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 4 | 267 | IPR001344 | GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro) | |
Sed10g0156 | 267 | SUPERFAMILY | Chlorophyll a-b binding protein | 50 | 264 | - | - | |
Sed10g0156 | 267 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Sed10g0156 | 267 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 58 | 260 | - | - | |
Sed10g0156 | 267 | Pfam | Chlorophyll A-B binding protein | 67 | 234 | IPR022796 | - | |
Sed10g0156 | 267 | Gene3D | Chlorophyll a/b binding protein domain | 58 | 260 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g1212 | Sed-Chr6:35380465 | Sed10g0156 | Sed-Chr10:961812 | 1.50E-126 | dispersed | |
Sed10g0156 | Sed-Chr10:961812 | Sed14g1562 | Sed-Chr14:23798355 | 8.00E-150 | dispersed | |
Sed10g0155 | Sed-Chr10:959200 | Sed10g0156 | Sed-Chr10:961812 | 3.20E-151 | tandem | |
Sed10g0156 | Sed-Chr10:961812 | Sed10g0157 | Sed-Chr10:965751 | 1.10E-151 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0156 | K08912 | - | csv:101213845 | 514.612 |