Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0157 ATGGCTGCTTCAACCATGGCTCTTTCCTCACCATCTCTGGCCGGCCAGGCCGTCAAGCTCTCCCCCAACTCCTCTGAGCTTCAGAGCAATGGAAGAGTCAGCATGAGGAAGACAGCCGGCAAGCCAGCTTCCTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCGTTCTCTGGCGAGGCACCGTCCTACCTGACGGGAGAATTCCCGGGCGACTACGGTTGGGACACCGCTGGACTTTCAGCTGATCCCGAGACCTTCGCCAAGAACCGTGAGCTTGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCCTTGGGCTGTGTCTTCCCCGAGCTGTTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCGGTGTGGTTCAAGGCTGGCTCTCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACTCGAGCTTGGTTCATGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGCTCATGGGTGCCGTCGAGGGCTACCGTATTGCTGGCGGTCCGCTCGGGGAGATCACCGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCTTTTGCTGAGCTGAAGGTGAAGGAGCTAAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAAGCCATTGTTACTGGAAAGGGTCCTTTGGAGAATTTGGCGGACCACCTTGCTGACCCAGTCAACAACAACGCTTGGTCCTATGCCACCAACTTCGTCCCTGGAAAGTGA 801 57.18 MAASTMALSSPSLAGQAVKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 965751 971067 + Sed0025943.1 Sed10g0157 726661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0157 266 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 266 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed10g0157 266 SUPERFAMILY Chlorophyll a-b binding protein 49 263 - -
Sed10g0157 266 MobiDBLite consensus disorder prediction 1 48 - -
Sed10g0157 266 MobiDBLite consensus disorder prediction 1 45 - -
Sed10g0157 266 FunFam Chlorophyll a-b binding protein, chloroplastic 57 259 - -
Sed10g0157 266 Pfam Chlorophyll A-B binding protein 66 233 IPR022796 -
Sed10g0157 266 Gene3D Chlorophyll a/b binding protein domain 57 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2226 Sed-Chr1:16699408 Sed10g0157 Sed-Chr10:965751 1.50E-140 dispersed
Sed05g1289 Sed-Chr5:24813832 Sed10g0157 Sed-Chr10:965751 2.70E-134 dispersed
Sed10g0155 Sed-Chr10:959200 Sed10g0157 Sed-Chr10:965751 1.30E-152 dispersed
Sed10g0157 Sed-Chr10:965751 Sed14g1562 Sed-Chr14:23798355 7.50E-148 dispersed
Sed10g0156 Sed-Chr10:961812 Sed10g0157 Sed-Chr10:965751 1.10E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0157 K08912 - csv:101213845 513.842