Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0194 ATGACTGATCTGTTTGAATTTGGTTTAGGTTTGAAGCAAATAATGAGTTCCAAGATGCCTGATTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGCGGATCGAAAATACGACGAATCGTCAAGTTACTTTCTGTAAGAGAAGAAATGGGCTGCTCAAAAAGGCCTATGAGCTTTCTGTGTTGTGTGATGCTGAAGTTGCTCTTATCGTTTTCTCGACCCGTGGCCGTCTCTACGAGTATGCTAACAACAGTGTGAAGGGAACAATTGAGAGATATAAGAAGGCATGCTCAGATTCCTCCAACACTGGATCTACATCAGAAGCTAACACACAGTTTTATCAACAAGAGGCTGCCAAACTCCGAGTTCAAATTGGTAATTTGCAGAACTCAAACAGGAACATGCTGGGTGAGTCTCTAAGTTCTTTGGGTGTGAAAGATCTGAAAGGTCTGGAAACCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGAGGAAAAGGGAACTTGATTTGCACAACAACAATCAACTGCTTAGAGCTAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGATCAATTTGAGATGATGCAATCCCATCCATACGATCCAAGAGACTTCTTCCAAGTCAACGGCTTACAGCATAGTCAACAGTATCCACGTCAAGACAACATGCCTCTTCAGTTAGTTTAA 747 41.1 MTDLFEFGLGLKQIMSSKMPDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLGVKDLKGLETKLEKGISRIRSKKNELLFAEIEYMRKRELDLHNNNQLLRAKIAESERNVNMMGGDQFEMMQSHPYDPRDFFQVNGLQHSQQYPRQDNMPLQLV 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1137633 1144299 - Sed0021520.1 Sed10g0194 726698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0194 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 223 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed10g0194 248 ProSiteProfiles K-box domain profile. 113 203 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g0194 248 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0194 248 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0194 248 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0194 248 CDD MADS_MEF2_like 28 104 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed10g0194 248 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0194 248 Gene3D - 39 121 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0194 248 SMART madsneu2 27 86 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0194 248 FunFam agamous-like MADS-box protein AGL11 39 122 - -
Sed10g0194 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0194 248 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0194 248 Coils Coil 150 170 - -
Sed10g0194 248 Pfam K-box region 109 197 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g0194 248 SUPERFAMILY SRF-like 28 101 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3262 Sed-Chr5:42093222 Sed10g0194 Sed-Chr10:1137633 1.30E-69 dispersed
Sed05g3263 Sed-Chr5:42093353 Sed10g0194 Sed-Chr10:1137633 1.30E-69 dispersed
Sed10g0194 Sed-Chr10:1137633 Sed10g2121 Sed-Chr10:37691019 1.40E-71 dispersed
Sed14g1017 Sed-Chr14:19692247 Sed10g0194 Sed-Chr10:1137633 2.00E-29 dispersed
Sed05g3856 Sed-Chr5:46154305 Sed10g0194 Sed-Chr10:1137633 9.10E-08 transposed
Sed10g0194 Sed-Chr10:1137633 Sed14g1542 Sed-Chr14:23620914 7.50E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39651 PF01486 K-box 1.10E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0194 K09264 - csv:101221430 426.787