Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0202 ATGGCTGAGATTTCAGGCTCAAGCAATGGTCAACACAGTGTTTCTTTGAATATCAAAGATGAATCCAAAGCTGTCACTTCCAGAGAACCTGCTGATTGTATCTCTGTTCCTTTCATTCAAAAGTTGGTTGCAGAAGTTGTGGGAACATATTTCTTGATATTTGCTGGTGGAGCAGCAGTGGTTGTGAATTTGGGGAAAGACAAAGTGATCACTTTTCCTGGGATTGCAATTGTTTGGGGTTTGGTTGTAATGGTTATGATCTACTCTGTTGGTCATATTTCTGGTGCTCATTTTAACCCTGCTGTCACCATTGCCTTTGCCATTACAAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAAGTGGGACACTTAGGCTAATATTTAATGGAAAAGAAGACCATTTTTCAGGGACTCTACCAAGTGATTCATATTTGCAAACTTTTGTCATTGAATTCATCATCACATTTTACCTTATGTTTGTGGTCTCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCTGTTGGCGCTACAGTCCTTCTCAACGTGATGTTTTCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGTTTAGGACCAGCAATAGTATCAAGGCAATTCACAGGGCTATGGATATACATGGTGGCACCAACTTTAGGGGCAATTGCAGGTGCTTTGGTCTACAACACCATAAGATTCACAGACAAACCTCTAAGAGAGATCACCAAAAGTGCATCTTTCCTCAAAGGACAGAGCCGTAATGGTTCACGTTGA 828 42.03 MAEISGSSNGQHSVSLNIKDESKAVTSREPADCISVPFIQKLVAEVVGTYFLIFAGGAAVVVNLGKDKVITFPGIAIVWGLVVMVMIYSVGHISGAHFNPAVTIAFAITKRFPWKQVPAYVIAQVLGSTLASGTLRLIFNGKEDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFSGPITGASMNPARSLGPAIVSRQFTGLWIYMVAPTLGAIAGALVYNTIRFTDKPLREITKSASFLKGQSRNGSR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1175963 1179440 - Sed0027616.1 Sed10g0202 726706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0202 275 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0202 275 SUPERFAMILY Aquaporin-like 34 260 IPR023271 -
Sed10g0202 275 CDD MIP 40 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0202 275 Gene3D Glycerol uptake facilitator protein. 7 261 IPR023271 -
Sed10g0202 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0202 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0202 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0202 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0202 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0202 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0202 275 PANTHER AQUAPORIN NIP2-1 25 254 IPR034294 -
Sed10g0202 275 NCBIfam MIP family channel protein 44 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0202 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1406 Sed-Chr5:27399014 Sed10g0202 Sed-Chr10:1175963 6.00E-61 dispersed
Sed08g1333 Sed-Chr8:27765406 Sed10g0202 Sed-Chr10:1175963 4.00E-56 dispersed
Sed10g0202 Sed-Chr10:1175963 Sed14g1537 Sed-Chr14:23588391 5.00E-123 dispersed
Sed10g0202 Sed-Chr10:1175963 Sed10g0203 Sed-Chr10:1175963 6.00E-108 tandem
Sed02g1267 Sed-Chr2:49378203 Sed10g0202 Sed-Chr10:1175963 1.50E-36 transposed
Sed06g1358 Sed-Chr6:37728624 Sed10g0202 Sed-Chr10:1175963 3.80E-78 transposed
Sed10g0202 Sed-Chr10:1175963 Sed14g1536 Sed-Chr14:23582304 4.00E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0202 K09874 - csv:101219297 475.322