Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0203 ATGGCTGAGATTTCAGGCTCAAGCAATGGTCAACACAGTGTTTCTTTGAATATCAAAGATGAATCCAAAGCTGTCACTTCCAGAGAACCTGCTGATTGTATCTCTGTTCCTTTCATTCAAAAGTTGGTTGCAGAAGTTGTGGGAACATATTTCTTGATATTTGCTGGTGGAGCAGCAGTGGTTGTGAATTTGGGGAAAGACAAAGTGATCACTTTTCCTGGGATTGCAATTGTTTGGGGTTTGGTTGTAATGGTTATGATCTACTCTGTTGGTCATATTTCTGGTGCTCATTTTAACCCTGCTGTCACCATTGCCTTTGCCATTACAAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAAGTGGGACACTTAGGCTAATATTTAATGGAAAAGAAGACCATTTTTCAGGGACTCTACCAAGTGATTCATATTTGCAAACTTTTGTCATTGAATTCATCATCACATTTTACCTTATGTTTGTGGTCTCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCTGTTGGCGCTACAGTCCTTCTCAACGTGATGTTTTCAGGGTATTTAATTTCAACATCTTCCTTTAATTTCAAACTAGAAACATTAAACTATAAGAAACCCTTTTGGCTATATTCTCAAGGGATATTCTTTATGATAAAAAGTTGTTCAACTTCAAACAATGAAAACATTCAAACCAATACTTCTAATGTTTTCATTGCATAA 771 37.74 MAEISGSSNGQHSVSLNIKDESKAVTSREPADCISVPFIQKLVAEVVGTYFLIFAGGAAVVVNLGKDKVITFPGIAIVWGLVVMVMIYSVGHISGAHFNPAVTIAFAITKRFPWKQVPAYVIAQVLGSTLASGTLRLIFNGKEDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFSGYLISTSSFNFKLETLNYKKPFWLYSQGIFFMIKSCSTSNNENIQTNTSNVFIA 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1175963 1179440 - Sed0027616.2 Sed10g0203 726707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0203 256 PANTHER AQUAPORIN NIP2-1 25 212 IPR034294 -
Sed10g0203 256 SUPERFAMILY Aquaporin-like 34 205 IPR023271 -
Sed10g0203 256 Pfam Major intrinsic protein 35 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0203 256 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0203 256 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0203 256 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0203 256 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0203 256 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed10g0203 256 Gene3D Glycerol uptake facilitator protein. 7 230 IPR023271 -
Sed10g0203 256 ProSitePatterns MIP family signature. 97 105 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0203 Sed-Chr10:1175963 Sed14g1537 Sed-Chr14:23588391 5.80E-89 dispersed
Sed10g0202 Sed-Chr10:1175963 Sed10g0203 Sed-Chr10:1175963 6.00E-108 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0203 K09874 - csv:101219297 349.362