Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0215 ATGATGTCCAAATCGTATACCAATCTTTTAGATTTAGCTTCGGGGAATTTTCCCATCATGGGTCGTGAGAAGAAGCGGCTTCCACGAGTAATGACTGTTGCAGGGGTGATATCAGAGCTTGATGAAGACCAAGCGAATAGTGTGACATCTGAGGGACCTTCGTCGATTGTGCAAGATCGTATAATTATTGTTGCTAATCAGCTTCCTATTAAAGCTAAGCGTCGGCCGGATAATAAAGGGTGGAGTTTTAGTTGGGATGAAGATTCTTTGCTGCGGCAGCTTAAGGATGGTTTGCCTGAAGATATGGAGGTTTTGTATGTAGGATCGTTGCGGGTGGATGTTGATTCCAACGAACAAGATGATGTGTCGCAGCTTTTGTTGGAGAGGTTTAAGTGCGTTCCTGCGTTTTTGCCTCATGACATTTTGTCTAAATTTTATCATGGTTTTTGTAAGCAGCACTTGTGGCCACTCTTTCATTATATGCTTCCGTTCTCGGCGACTCATGGGGGTCGGTTTGATCGGTCTCTGTGGGAGGCTTATGTTGCTGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAATCCAGATGATGACTTCGTTTGGATTCATGATTACCATTTAATGGTGTTGCCTTCCTTTTTGAGGAGAAGGTTTACTAGATTGAGAATGGGGTTTTTTCTTCACAGTCCATTTCCTTCGTCAGAAATATATAGGACTTTGCCAGTGAGGGAAGAAATTCTTAAGGCTCTTCTGAATGCAGACCTTATTGGTTTTCACACTTTCGATTATGCTCGGCATTTTTTGTCTTGTTGCAGTCGAATGTTGGGTTTGGTATATCAGTCGAAAAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACAGTGGGGATAAAAATCATGCCTGTTGGAATTCACATGGGTCAGATGGAGTCTGTGCTAAGTCTTGCTGATAAAGAGTGGAGGGTAGAGGAGCTCAAGCGACAGTTTGAAGGAAAAGTTGTATTACTTGGAGTTGATGATATGGACATTTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAGATGCTAAAGCAACATCCAAAGTGGCAAGGTAGAGCTGTTTTCGTGCAGATTGCGAACCCAGCTAGAGGAAGAGGGAAAGATCTTGAGGAAATACAAGATGAAATTCAGGAGTGCTGCAAGAGAATTAATCACAGTTTTCGACAGCCTAATTATGAACCAATTGTGTTCATTGATCGGCCTGTTTCTCTCACCGAAAGAGCTGCATATTATACTATTGCCGAATGTGTTGTAGTCACAGCAGTGAGGGATGGCATGAACCTAACTCCTTATGAGTATGTTGTATGCAGGCAGGGCACCTCCGGATCAGATAATAGCACAGAAAAAAATGGACCGCAAAAGAGCATGCTTGTCATATCAGAGTTCATGGGATGCTCCCCTTCACTTAGTGGTGCACTACGGGTTAACCCGTGGAACATTGAAGCTACTGCCGAAGCATTGAATGAGGCAATATCAATGGCGGATGCCGAGAAGCAATTGCGCCATGAAAAGCATTACAAATATGTGAGTACACATGATGTGTCATACTGGGCGAAGAGTTTTTATCAAGACATGGAAAGAACTTGTAAGGATCACTTCAGAAGACGGTGCTGGGGAATTGGACTGGGCTTTGGATTCAGAGTTGTAGCACTTGATCCCAGCTTTAAAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCCAAGTCTAGACACAGGGCTATACTGTTGGATTATGATGGCACTGTTATGCCACAAACTTCAATAGATAAGACCCCAAGTAATCAAGTTATTTCAATTGTAGATTCACTCATTGCCGACGTTAGGAATACTGTTTTTGTCGTCAGTGGAAGAGGGCGTGAAAGTTTGGGCAACTGGTTTTCTCCTTGTGAGAAACTTGGGATTGCTGCAGAGCATGGCTATTTCATGAGGTGGTCTGCTGATAAGGAGTGGGAAAATTATGGTCAAGGTAGTGATTTTGGTTGGATACAGATTGCCGAGCCAGTCATGAAATTATATACAGAAGCTACAGATGGCTCTTCCATTGAAACCAAGGAAAGTGGGTTGGTATGGCACCACCAGGATGCGGACCCTGATTTTGGTTCCAGCCAGGCCAAGGAACTGTTAGATCACCTTGAGAGTGTGCTGGCTAATGAACCAGTTACTGTAAAAAGTGGCCAATTTATTATAGAAGTGAAGCCACAGGGAGTTAGTAAAGGTTTGGTGGCAGAAAAGATCTTCGCTTCAATGGAAGATGCGGGAAGACGGGCCGATTTTGTGCTATGCATTGGTGATGATAGATCCGATGAAGACATGTTCGAGATCATTGGCACAGCAGTATCAAGTGGCGTCCTCTCATCTAATACATCAGTTTTTGCATGCACAGTGGGACAGAAACCAAGCAAGGCCAAGTATTACTTGGATGACACAATTGAGGTCATAAACATGCTTGAAGCTCTTGCAGAAGTTTCAGACATTTCTTCCCCTCCCGAATCCCCTTGA 2553 43.16 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDEDQANSVTSEGPSSIVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLRQLKDGLPEDMEVLYVGSLRVDVDSNEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQHLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLVYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLSLADKEWRVEELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLKQHPKWQGRAVFVQIANPARGRGKDLEEIQDEIQECCKRINHSFRQPNYEPIVFIDRPVSLTERAAYYTIAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDNSTEKNGPQKSMLVISEFMGCSPSLSGALRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVSYWAKSFYQDMERTCKDHFRRRCWGIGLGFGFRVVALDPSFKKLSIDAIVAAYSKSRHRAILLDYDGTVMPQTSIDKTPSNQVISIVDSLIADVRNTVFVVSGRGRESLGNWFSPCEKLGIAAEHGYFMRWSADKEWENYGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESGLVWHHQDADPDFGSSQAKELLDHLESVLANEPVTVKSGQFIIEVKPQGVSKGLVAEKIFASMEDAGRRADFVLCIGDDRSDEDMFEIIGTAVSSGVLSSNTSVFACTVGQKPSKAKYYLDDTIEVINMLEALAEVSDISSPPESP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1234822 1240022 - Sed0020558.1 Sed10g0215 726719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0215 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Sed10g0215 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
Sed10g0215 850 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Sed10g0215 850 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed10g0215 850 Gene3D Glycogen Phosphorylase B; 321 528 - -
Sed10g0215 850 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 849 - -
Sed10g0215 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
Sed10g0215 850 NCBIfam trehalose-phosphatase 587 838 IPR003337 GO:0005992(InterPro)
Sed10g0215 850 Gene3D - 589 707 IPR023214 -
Sed10g0215 850 Gene3D - 718 845 IPR023214 -
Sed10g0215 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Sed10g0215 850 NCBIfam HAD-IIB family hydrolase 592 798 IPR006379 -
Sed10g0215 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed10g0215 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Sed10g0215 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed10g0215 850 Gene3D Glycogen Phosphorylase B; 50 320 - -
Sed10g0215 850 CDD HAD_TPP 591 832 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0856 Sed-Chr4:7408572 Sed10g0215 Sed-Chr10:1234822 0.00E+00 dispersed
Sed04g0857 Sed-Chr4:7408572 Sed10g0215 Sed-Chr10:1234822 0.00E+00 dispersed
Sed05g3181 Sed-Chr5:41669794 Sed10g0215 Sed-Chr10:1234822 8.60E-208 dispersed
Sed10g0215 Sed-Chr10:1234822 Sed14g1528 Sed-Chr14:23539662 0.00E+00 dispersed
Sed10g0215 Sed-Chr10:1234822 Sed14g1527 Sed-Chr14:23539662 0.00E+00 wgd
Sed10g0215 Sed-Chr10:1234822 Sed04g3380 Sed-Chr4:43804087 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0215 K16055 - csv:101213082 1630.54