Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0228 ATGGCCGACCGGCCAGACTCCGACAAGAAAACCGAGACCACAAGGAAGGACATGCCGGCTCTTCTCTTGGGCCGGTACGAGATCGGCAAGCTCCTCGGCCATGGAACCTTCGCCAAGGTCTACGTAGCTCGCAACATCAAAACCGACGAAAACGTCGCCATTAAAGTGATAGACAAAGAGAAAATCCTCAAGGGCGGCCTAATCGCCCACATCAAACGCGAGATCTCGATCCTCCGCCGCGTCCGCCACCCGAACATCGTCCAGCTCTTCGAGGTAATGGCCACCAAGGCCAAGATCTACTTCGTCATGGAATACGTCCGCGGCGGAGAGCTTTTCAAGAAGGTCTCAAAGGGCAGATTGAAAGAAGAAGTCGCTCGTAAGTATTTTCAGCAATTAATCTCCGCGGTTGCGTTTTGCCATGCTCGTGGTGTTTATCACCGCGACCTTAAGCCCGAGAATTTGTTGCTTGATGAGAATGGGAACCTTAAGGTCTCCGATTTCGGCCTCAGCGCCGTCTCGGACCAAATTCGACAAGATGGGCTGTTTCATACGTTCTGTGGTACCCCGGCTTATGTTGCCCCGGAGGTATTGGCTCGAAAAGGGTATGAAGCTGTTAAGGTTGATATTTGGTCGTGTGGGGTTATTTTGTTTGTGCTAATGGCTGGTTATTTACCCTTTCATGATCAAAATGTTATGGCAATGTATAAGAAGATTTACAAGGGGAAATTTCGGTGTCCGAGATGGTTCTCGACCGAGCTAATTCGACTGTTGTATCGCCTTTTGGATACTAATCCTGAAACTCGTTTTACAATTCCTGAAATCATGGAGAATAAATGGTTCAAGAAGGGGTATAAGCATATAAAATTCTACATTGACGACGATAAGGTTTGCAGGTTTGAGGATCACAGTGATGATATTGATTCGTTGTCGGATCAATCTCAATCTGAATCGGATTCCGAGATTATTGAGACTAGAAGAAGGGTAACTACACTTCCTAGACCGGCGAGTTTGAATGCGTTCGATATAATTTCTTTTTCGCCTGGATTTGATCTTTCGGGGTTGTTTGAGGATGGAGGGGAAGAGGCAAGATTTGTGTCGAGTGCTCCAGTGTCGAGGATTATATCGAAATTGGAGGAGATTGCAAAATTGGTGAGTTTTACAGTGAGGAAGAAGGATTGTAGGGTGAGTTTAGAGGGGTCACGGGAAGGAGTGAAAGGGCCATTGACGATTGCTGCGGAGGTATTCGAGTTGACGCCGAAATTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAGTTCTGTACTAAGGAATTGAGACCAGCATTGCTGAATTTGCAGGTGGAGGACACTTCTTGTCCATCACAGTTACCATCAGATTCTGAATGA 1404 47.01 MADRPDSDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYVARNIKTDENVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAVKVDIWSCGVILFVLMAGYLPFHDQNVMAMYKKIYKGKFRCPRWFSTELIRLLYRLLDTNPETRFTIPEIMENKWFKKGYKHIKFYIDDDKVCRFEDHSDDIDSLSDQSQSESDSEIIETRRRVTTLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSRIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPKLVMVEVKRKGGDKAEYEQFCTKELRPALLNLQVEDTSCPSQLPSDSE 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1305748 1307927 + Sed0003728.1 Sed10g0228 726732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0228 467 Gene3D Transferase(Phosphotransferase) domain 1 17 332 - -
Sed10g0228 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 448 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed10g0228 467 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0228 467 SUPERFAMILY Protein kinase-like (PK-like) 22 329 IPR011009 -
Sed10g0228 467 FunFam Non-specific serine/threonine protein kinase 334 452 - -
Sed10g0228 467 Gene3D Kinase associated domain 1, KA1 333 452 - -
Sed10g0228 467 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165(InterPro)
Sed10g0228 467 FunFam Non-specific serine/threonine protein kinase 16 326 - -
Sed10g0228 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0228 467 SMART serkin_6 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0228 467 CDD CIPK_C 338 448 - -
Sed10g0228 467 FunFam Non-specific serine/threonine protein kinase 18 105 - -
Sed10g0228 467 Pfam NAF domain 334 390 IPR004041 GO:0007165(InterPro)
Sed10g0228 467 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524(InterPro)
Sed10g0228 467 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0228 Sed-Chr10:1305748 Sed14g0587 Sed-Chr14:5939868 4.50E-140 dispersed
Sed01g2162 Sed-Chr1:16282261 Sed10g0228 Sed-Chr10:1305748 8.80E-141 wgd
Sed10g0228 Sed-Chr10:1305748 Sed14g1514 Sed-Chr14:23449645 2.20E-248 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79800 PF00069 Pkinase 6.50E-75 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0228 - - - 0.0