Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0228 | ATGGCCGACCGGCCAGACTCCGACAAGAAAACCGAGACCACAAGGAAGGACATGCCGGCTCTTCTCTTGGGCCGGTACGAGATCGGCAAGCTCCTCGGCCATGGAACCTTCGCCAAGGTCTACGTAGCTCGCAACATCAAAACCGACGAAAACGTCGCCATTAAAGTGATAGACAAAGAGAAAATCCTCAAGGGCGGCCTAATCGCCCACATCAAACGCGAGATCTCGATCCTCCGCCGCGTCCGCCACCCGAACATCGTCCAGCTCTTCGAGGTAATGGCCACCAAGGCCAAGATCTACTTCGTCATGGAATACGTCCGCGGCGGAGAGCTTTTCAAGAAGGTCTCAAAGGGCAGATTGAAAGAAGAAGTCGCTCGTAAGTATTTTCAGCAATTAATCTCCGCGGTTGCGTTTTGCCATGCTCGTGGTGTTTATCACCGCGACCTTAAGCCCGAGAATTTGTTGCTTGATGAGAATGGGAACCTTAAGGTCTCCGATTTCGGCCTCAGCGCCGTCTCGGACCAAATTCGACAAGATGGGCTGTTTCATACGTTCTGTGGTACCCCGGCTTATGTTGCCCCGGAGGTATTGGCTCGAAAAGGGTATGAAGCTGTTAAGGTTGATATTTGGTCGTGTGGGGTTATTTTGTTTGTGCTAATGGCTGGTTATTTACCCTTTCATGATCAAAATGTTATGGCAATGTATAAGAAGATTTACAAGGGGAAATTTCGGTGTCCGAGATGGTTCTCGACCGAGCTAATTCGACTGTTGTATCGCCTTTTGGATACTAATCCTGAAACTCGTTTTACAATTCCTGAAATCATGGAGAATAAATGGTTCAAGAAGGGGTATAAGCATATAAAATTCTACATTGACGACGATAAGGTTTGCAGGTTTGAGGATCACAGTGATGATATTGATTCGTTGTCGGATCAATCTCAATCTGAATCGGATTCCGAGATTATTGAGACTAGAAGAAGGGTAACTACACTTCCTAGACCGGCGAGTTTGAATGCGTTCGATATAATTTCTTTTTCGCCTGGATTTGATCTTTCGGGGTTGTTTGAGGATGGAGGGGAAGAGGCAAGATTTGTGTCGAGTGCTCCAGTGTCGAGGATTATATCGAAATTGGAGGAGATTGCAAAATTGGTGAGTTTTACAGTGAGGAAGAAGGATTGTAGGGTGAGTTTAGAGGGGTCACGGGAAGGAGTGAAAGGGCCATTGACGATTGCTGCGGAGGTATTCGAGTTGACGCCGAAATTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAGTTCTGTACTAAGGAATTGAGACCAGCATTGCTGAATTTGCAGGTGGAGGACACTTCTTGTCCATCACAGTTACCATCAGATTCTGAATGA | 1404 | 47.01 | MADRPDSDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYVARNIKTDENVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAVKVDIWSCGVILFVLMAGYLPFHDQNVMAMYKKIYKGKFRCPRWFSTELIRLLYRLLDTNPETRFTIPEIMENKWFKKGYKHIKFYIDDDKVCRFEDHSDDIDSLSDQSQSESDSEIIETRRRVTTLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSRIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPKLVMVEVKRKGGDKAEYEQFCTKELRPALLNLQVEDTSCPSQLPSDSE | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1305748 | 1307927 | + | Sed0003728.1 | Sed10g0228 | 726732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0228 | 467 | Gene3D | Transferase(Phosphotransferase) domain 1 | 17 | 332 | - | - | |
Sed10g0228 | 467 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 13 | 448 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Sed10g0228 | 467 | Pfam | Protein kinase domain | 26 | 280 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g0228 | 467 | SUPERFAMILY | Protein kinase-like (PK-like) | 22 | 329 | IPR011009 | - | |
Sed10g0228 | 467 | FunFam | Non-specific serine/threonine protein kinase | 334 | 452 | - | - | |
Sed10g0228 | 467 | Gene3D | Kinase associated domain 1, KA1 | 333 | 452 | - | - | |
Sed10g0228 | 467 | ProSiteProfiles | NAF domain profile. | 332 | 356 | IPR018451 | GO:0007165(InterPro) | |
Sed10g0228 | 467 | FunFam | Non-specific serine/threonine protein kinase | 16 | 326 | - | - | |
Sed10g0228 | 467 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed10g0228 | 467 | SMART | serkin_6 | 26 | 280 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g0228 | 467 | CDD | CIPK_C | 338 | 448 | - | - | |
Sed10g0228 | 467 | FunFam | Non-specific serine/threonine protein kinase | 18 | 105 | - | - | |
Sed10g0228 | 467 | Pfam | NAF domain | 334 | 390 | IPR004041 | GO:0007165(InterPro) | |
Sed10g0228 | 467 | ProSitePatterns | Protein kinases ATP-binding region signature. | 32 | 55 | IPR017441 | GO:0005524(InterPro) | |
Sed10g0228 | 467 | ProSiteProfiles | Protein kinase domain profile. | 26 | 280 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0228 | Sed-Chr10:1305748 | Sed14g0587 | Sed-Chr14:5939868 | 4.50E-140 | dispersed | |
Sed01g2162 | Sed-Chr1:16282261 | Sed10g0228 | Sed-Chr10:1305748 | 8.80E-141 | wgd | |
Sed10g0228 | Sed-Chr10:1305748 | Sed14g1514 | Sed-Chr14:23449645 | 2.20E-248 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79800 | PF00069 | Pkinase | 6.50E-75 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0228 | - | - | - | 0.0 |