Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g0236 | ATGGCTGAGGTTCATAGTAGCAACACGGCTGGAATTAAGCTCTTTGGGACTATGATCAATTTACAAACAAGAAAATTCAAGGAGGAGCCGGAGAAAGGCGGCGGCGACGGAGGTGGCGGCGGCGGCGGAGATGAAACAGAGATAAAGAGGCCGGAAAAAATAATTCCATGTCCAAGATGTAAGAGCATGGAGACAAAATTCTGTTACTTCAACAATTACAACGTTAATCAGCCAAGACATTTCTGCAAGGGTTGTCAGAGATACTGGACGGCCGGTGGGGCCCTGCGAAACGTGCCCATCGGCGCCGGCCGCCGGAAAGCCAAGCCTTGCCGGAGCATTTCCGGCGAGATGCTGCCGGAGGAATATGGGATTATTCACCAGCTTGAATTGGATGCGGCGGAGGGGTGGCAGCTCACGGTGGCGGAACAGGATTTTGGTCAACTTTTTCCTCTTAAACGACAGAGGATTGTCGGTCAACGCGGTCAAACGTCTTAA | 495 | 51.72 | MAEVHSSNTAGIKLFGTMINLQTRKFKEEPEKGGGDGGGGGGGDETEIKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPCRSISGEMLPEEYGIIHQLELDAAEGWQLTVAEQDFGQLFPLKRQRIVGQRGQTS | 164 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1387580 | 1388446 | + | Sed0018148.1 | Sed10g0236 | 726740 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g0236 | 164 | MobiDBLite | consensus disorder prediction | 25 | 48 | - | - | |
| Sed10g0236 | 164 | ProSitePatterns | Zinc finger Dof-type signature. | 57 | 93 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Sed10g0236 | 164 | ProSiteProfiles | Zinc finger Dof-type profile. | 55 | 109 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Sed10g0236 | 164 | PANTHER | CYCLIC DOF FACTOR 2 | 36 | 113 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Sed10g0236 | 164 | Pfam | Dof domain, zinc finger | 53 | 108 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g0236 | Sed-Chr10:1387580 | Sed12g1119 | Sed-Chr12:7351167 | 3.00E-30 | dispersed | |
| Sed01g2154 | Sed-Chr1:16172692 | Sed10g0236 | Sed-Chr10:1387580 | 2.30E-38 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 39658 | PF02701 | zf-Dof | 2.30E-31 | No_clan | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g0236 | - | - | - | 0.0 |