Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0273 ATGGCTTCTTCAAACAGACACTGGCCTAGCATGTTCAAATCCAAGCCCTGTAATTCTCACCACCAATGGCAACATGACATTAACTCTAATCTTTCTTCTTCCACTGCCACCATCTTCAGATCTGCCCCTTACTCTGCAGTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCAAAGCCAAGATGGAATCCAAGACCTGAACAAATTAGGATTCTTGAAGCAATTTTCAATTCTGGAATGGTGAATCCACCTAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAAGAATATGGCCAAGTGGGTGATGCCAATGTTTTTTATTGGTTCCAAAACAGAAAATCCAGAAGCAAAAACAAGCTTCGTCATATCCAAAACTCCAAATCCAATCATAATTCCCAAACTACCACCACTCCTACTATAACATCTACTCATTCTCCTACCGCCACCGTCATCGCATCCTCCGTCGCCGCCACTTGTTCTTCGTCCTCTTCTTCGGACAAATCTTCCCCAAAAACAGCACCCATCAAAACATTTAGTCCCAATTCTGTGACCCAGAACTACCTTCCACCACCCACCAATGATCTCTTACCCGAGCCGTTTTTCTACCCGATGACCGGCTCGGGCGGTGGAGGGTCTAATTTGAGTCAAGGGTTTTGCTTCTCTGAGCTTTGTAGTGTGGTGCACCAAGTTCCTGAACATGGAGTTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGCTTATGAGCCCAAATGAGGTTTTGAAGAAAGATTTGGATCATGATAAGGTTATGGTGAAGTTGCAGCCACAGTTCATGAACTATCATTATCCTTCTACTTATAACACTCTTCCCCAAACCACTATTTCCACCTCCCTCCCAACTGTTCTTTCTCCTACCAATGCAATTCATCAAGGTCTAGGTGAAGCTTGTGGAATAGGGCAAAGCTGTGTAGGGAAATCAACGGTGTTCATCAATGGTGTGGGGTTCGAGGTGGGATCTGGACCGTTCAATGTTCGTGAGGCTTTTGGTGATGAAGCTGTTCTGATTAACTCTACTGGTCAGCCTGTTCTCACCAATGAGTGGGGCCTCACTCTCCACTCACTCCAACATGGCTCCTCTTATTATCTGATATAA 1131 45.18 MASSNRHWPSMFKSKPCNSHHQWQHDINSNLSSSTATIFRSAPYSAVGGCEERSPEPKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKNKLRHIQNSKSNHNSQTTTTPTITSTHSPTATVIASSVAATCSSSSSSDKSSPKTAPIKTFSPNSVTQNYLPPPTNDLLPEPFFYPMTGSGGGGSNLSQGFCFSELCSVVHQVPEHGVGPCTSLLLSELMSPNEVLKKDLDHDKVMVKLQPQFMNYHYPSTYNTLPQTTISTSLPTVLSPTNAIHQGLGEACGIGQSCVGKSTVFINGVGFEVGSGPFNVREAFGDEAVLINSTGQPVLTNEWGLTLHSLQHGSSYYLI 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1583327 1585634 + Sed0015574.1 Sed10g0273 726777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0273 376 CDD homeodomain 57 119 IPR001356 GO:0003677(InterPro)
Sed10g0273 376 MobiDBLite consensus disorder prediction 117 145 - -
Sed10g0273 376 Gene3D - 58 124 - -
Sed10g0273 376 FunFam WUSCHEL-related homeobox 11 58 125 - -
Sed10g0273 376 ProSiteProfiles 'Homeobox' domain profile. 54 119 IPR001356 GO:0003677(InterPro)
Sed10g0273 376 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 376 IPR044557 GO:0003700(InterPro)|GO:0050793(InterPro)
Sed10g0273 376 SUPERFAMILY Homeodomain-like 54 121 IPR009057 -
Sed10g0273 376 MobiDBLite consensus disorder prediction 125 145 - -
Sed10g0273 376 Pfam Homeodomain 58 118 IPR001356 GO:0003677(InterPro)
Sed10g0273 376 MobiDBLite consensus disorder prediction 159 190 - -
Sed10g0273 376 SMART HOX_1 56 123 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0298 Sed-Chr2:39203234 Sed10g0273 Sed-Chr10:1583327 4.80E-24 dispersed
Sed10g0273 Sed-Chr10:1583327 Sed12g1223 Sed-Chr12:8527829 7.30E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39661 PF00046 Homeodomain 2.60E-14 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0273 - - - 0.0