Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0273 ATGGCTTCTTCAAACAGACACTGGCCTAGCATGTTCAAATCCAAGCCCTGTAATTCTCACCACCAATGGCAACATGACATTAACTCTAATCTTTCTTCTTCCACTGCCACCATCTTCAGATCTGCCCCTTACTCTGCAGTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCAAAGCCAAGATGGAATCCAAGACCTGAACAAATTAGGATTCTTGAAGCAATTTTCAATTCTGGAATGGTGAATCCACCTAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAAGAATATGGCCAAGTGGGTGATGCCAATGTTTTTTATTGGTTCCAAAACAGAAAATCCAGAAGCAAAAACAAGCTTCGTCATATCCAAAACTCCAAATCCAATCATAATTCCCAAACTACCACCACTCCTACTATAACATCTACTCATTCTCCTACCGCCACCGTCATCGCATCCTCCGTCGCCGCCACTTGTTCTTCGTCCTCTTCTTCGGACAAATCTTCCCCAAAAACAGCACCCATCAAAACATTTAGTCCCAATTCTGTGACCCAGAACTACCTTCCACCACCCACCAATGATCTCTTACCCGAGCCGTTTTTCTACCCGATGACCGGCTCGGGCGGTGGAGGGTCTAATTTGAGTCAAGGGTTTTGCTTCTCTGAGCTTTGTAGTGTGGTGCACCAAGTTCCTGAACATGGAGTTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGCTTATGAGCCCAAATGAGGTTTTGAAGAAAGATTTGGATCATGATAAGGTTATGGTGAAGTTGCAGCCACAGTTCATGAACTATCATTATCCTTCTACTTATAACACTCTTCCCCAAACCACTATTTCCACCTCCCTCCCAACTGTTCTTTCTCCTACCAATGCAATTCATCAAGGTCTAGGTGAAGCTTGTGGAATAGGGCAAAGCTGTGTAGGGAAATCAACGGTGTTCATCAATGGTGTGGGGTTCGAGGTGGGATCTGGACCGTTCAATGTTCGTGAGGCTTTTGGTGATGAAGCTGTTCTGATTAACTCTACTGGTCAGCCTGTTCTCACCAATGAGTGGGGCCTCACTCTCCACTCACTCCAACATGGCTCCTCTTATTATCTGATATAA 1131 45.18 MASSNRHWPSMFKSKPCNSHHQWQHDINSNLSSSTATIFRSAPYSAVGGCEERSPEPKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKNKLRHIQNSKSNHNSQTTTTPTITSTHSPTATVIASSVAATCSSSSSSDKSSPKTAPIKTFSPNSVTQNYLPPPTNDLLPEPFFYPMTGSGGGGSNLSQGFCFSELCSVVHQVPEHGVGPCTSLLLSELMSPNEVLKKDLDHDKVMVKLQPQFMNYHYPSTYNTLPQTTISTSLPTVLSPTNAIHQGLGEACGIGQSCVGKSTVFINGVGFEVGSGPFNVREAFGDEAVLINSTGQPVLTNEWGLTLHSLQHGSSYYLI 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1583327 1585634 + Sed0015574.1 Sed10g0273 726777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0273 376 CDD homeodomain 57 119 IPR001356 GO:0003677(InterPro)
Sed10g0273 376 MobiDBLite consensus disorder prediction 117 145 - -
Sed10g0273 376 Gene3D - 58 124 - -
Sed10g0273 376 FunFam WUSCHEL-related homeobox 11 58 125 - -
Sed10g0273 376 ProSiteProfiles 'Homeobox' domain profile. 54 119 IPR001356 GO:0003677(InterPro)
Sed10g0273 376 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 376 IPR044557 GO:0003700(InterPro)|GO:0050793(InterPro)
Sed10g0273 376 SUPERFAMILY Homeodomain-like 54 121 IPR009057 -
Sed10g0273 376 MobiDBLite consensus disorder prediction 125 145 - -
Sed10g0273 376 Pfam Homeodomain 58 118 IPR001356 GO:0003677(InterPro)
Sed10g0273 376 MobiDBLite consensus disorder prediction 159 190 - -
Sed10g0273 376 SMART HOX_1 56 123 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0273 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0298 Sed-Chr2:39203234 Sed10g0273 Sed-Chr10:1583327 4.80E-24 dispersed
Sed10g0273 Sed-Chr10:1583327 Sed12g1223 Sed-Chr12:8527829 7.30E-24 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008426 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39661 PF00046 Homeodomain 2.60E-14 CL0123 Sed TF