Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0277 ATGAGAAGGTATTCGAAGATCAGTTGCAAATCGGCTTCTCATAAGCTCTTTAAGGACAAGGCGAAGAACCGGGTGGATGATCTGCAAAGCATATTTGTAGATTTGCAATATGCAAGGAAAGAGAGCCGATCCGTTGATGTTGTCGTTCTCGAGGAACAAGTTCATCAGATGCTTCGTGAGTGGAAATCTGAGCTGAACGAGCCCTCTCCAGCATCCTCTCTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCGGACATTTGTCGATTGTTACAACTTTGCGAGGAGGATGATGATGCATCTAGTCCATTAGCTGCTCCTAAGCCTGAACCCAATGATCTTAATCTGCAGGTTGGAGATACTATGGCAGTTCGAGAGGGATTTAATGTGAATCATGTACACCAAGAATCAAGCTTCCCTCTACTTGATCAATGCAAGAACTCCCCGTCCGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGAAATCCATATTTGGACTGTCATCAGTTTGATTTACATCAAGGCATTGAGCACAACTTTTACTCTTTCCTTAACGGTAAAGGTTTGTGTGGGGAGGGTGCAATTCCTCATGTTTCTAGCTATTGCCCCAGCATATGTCCTCCACCTGCTGCTTTTTTAGGCCCAACCTGTGCACTTTGGGATTGCCCACGGCCTGCCCAAGGTTTGGATTGGTGTGAGGACTACTGTAGCAGTTTTCATGCTGCCTTGGCATTGACTGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGGCCCGGTGGCATCGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCGAAGGCACAAGGAAAAGATGTTGGTATCCCTGAATGTGAAGGAGCTGCCACCGCAAAATCCCCATGGAACGCTCCTGAGCTTTTTAATCTGTCAATTTTGGAGGGCGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGCGGGAATAGGAAGCAGAGGTCATTGCCTGACTATAGTGGACGCGGTTGGCACGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAGTATGAAATCAACAAGTATGATGCCTGCGCTTTGTATAGATTGGAGCTGAAACTTGTTGATGGGAAAAAAAGTTCGAAGGCAAAGGCAACTAATGATTCGGTTGCTGATTTACAGAGGCAAATGGGGAGACTGACTGCTGAGTTTCCTGATAGTAAACGCTTTATGAAGGGGAGGACCAAATCTAACACAAAAGTTGGTATTGGAAGTGTTTACCCTTCAGCAAACAGGGTCATGCCACCCAATGGAACATATGACTATATGCTTCATGCACAATATGATTACCTTGCGGAGAATTTGAGCGAATATTACCTATAA 1449 45.13 MRRYSKISCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRSVDVVVLEEQVHQMLREWKSELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNDLNLQVGDTMAVREGFNVNHVHQESSFPLLDQCKNSPSGVHGMAMNNLEGNPYLDCHQFDLHQGIEHNFYSFLNGKGLCGEGAIPHVSSYCPSICPPPAAFLGPTCALWDCPRPAQGLDWCEDYCSSFHAALALTEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFNLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKSSKAKATNDSVADLQRQMGRLTAEFPDSKRFMKGRTKSNTKVGIGSVYPSANRVMPPNGTYDYMLHAQYDYLAENLSEYYL 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1603744 1607625 - Sed0002213.1 Sed10g0277 726781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0277 482 PANTHER TRANSCRIPTION FACTOR VOZ1 1 481 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(InterPro)|GO:0048578(PANTHER)
Sed10g0277 482 Coils Coil 405 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0937 Sed-Chr5:7553167 Sed10g0277 Sed-Chr10:1603744 2.60E-135 dispersed
Sed05g0938 Sed-Chr5:7554109 Sed10g0277 Sed-Chr10:1603744 1.60E-77 dispersed
Sed10g0277 Sed-Chr10:1603744 Sed14g1495 Sed-Chr14:23297696 1.80E-261 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39662 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0277 - - - 0.0