Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0277 ATGAGAAGGTATTCGAAGATCAGTTGCAAATCGGCTTCTCATAAGCTCTTTAAGGACAAGGCGAAGAACCGGGTGGATGATCTGCAAAGCATATTTGTAGATTTGCAATATGCAAGGAAAGAGAGCCGATCCGTTGATGTTGTCGTTCTCGAGGAACAAGTTCATCAGATGCTTCGTGAGTGGAAATCTGAGCTGAACGAGCCCTCTCCAGCATCCTCTCTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCGGACATTTGTCGATTGTTACAACTTTGCGAGGAGGATGATGATGCATCTAGTCCATTAGCTGCTCCTAAGCCTGAACCCAATGATCTTAATCTGCAGGTTGGAGATACTATGGCAGTTCGAGAGGGATTTAATGTGAATCATGTACACCAAGAATCAAGCTTCCCTCTACTTGATCAATGCAAGAACTCCCCGTCCGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGAAATCCATATTTGGACTGTCATCAGTTTGATTTACATCAAGGCATTGAGCACAACTTTTACTCTTTCCTTAACGGTAAAGGTTTGTGTGGGGAGGGTGCAATTCCTCATGTTTCTAGCTATTGCCCCAGCATATGTCCTCCACCTGCTGCTTTTTTAGGCCCAACCTGTGCACTTTGGGATTGCCCACGGCCTGCCCAAGGTTTGGATTGGTGTGAGGACTACTGTAGCAGTTTTCATGCTGCCTTGGCATTGACTGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGGCCCGGTGGCATCGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCGAAGGCACAAGGAAAAGATGTTGGTATCCCTGAATGTGAAGGAGCTGCCACCGCAAAATCCCCATGGAACGCTCCTGAGCTTTTTAATCTGTCAATTTTGGAGGGCGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGCGGGAATAGGAAGCAGAGGTCATTGCCTGACTATAGTGGACGCGGTTGGCACGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAGTATGAAATCAACAAGTATGATGCCTGCGCTTTGTATAGATTGGAGCTGAAACTTGTTGATGGGAAAAAAAGTTCGAAGGCAAAGGCAACTAATGATTCGGTTGCTGATTTACAGAGGCAAATGGGGAGACTGACTGCTGAGTTTCCTGATAGTAAACGCTTTATGAAGGGGAGGACCAAATCTAACACAAAAGTTGGTATTGGAAGTGTTTACCCTTCAGCAAACAGGGTCATGCCACCCAATGGAACATATGACTATATGCTTCATGCACAATATGATTACCTTGCGGAGAATTTGAGCGAATATTACCTATAA 1449 45.13 MRRYSKISCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRSVDVVVLEEQVHQMLREWKSELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNDLNLQVGDTMAVREGFNVNHVHQESSFPLLDQCKNSPSGVHGMAMNNLEGNPYLDCHQFDLHQGIEHNFYSFLNGKGLCGEGAIPHVSSYCPSICPPPAAFLGPTCALWDCPRPAQGLDWCEDYCSSFHAALALTEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFNLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKSSKAKATNDSVADLQRQMGRLTAEFPDSKRFMKGRTKSNTKVGIGSVYPSANRVMPPNGTYDYMLHAQYDYLAENLSEYYL 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1603744 1607625 - Sed0002213.1 Sed10g0277 726781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0277 482 PANTHER TRANSCRIPTION FACTOR VOZ1 1 481 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(InterPro)|GO:0048578(PANTHER)
Sed10g0277 482 Coils Coil 405 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0277 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0937 Sed-Chr5:7553167 Sed10g0277 Sed-Chr10:1603744 2.60E-135 dispersed
Sed05g0938 Sed-Chr5:7554109 Sed10g0277 Sed-Chr10:1603744 1.60E-77 dispersed
Sed10g0277 Sed-Chr10:1603744 Sed14g1495 Sed-Chr14:23297696 1.80E-261 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed14g1495 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 70.7 3.5e-196 682.2
Sed10g0277 . 5 482 VOZ-9 Transcription Factor Family AT1G28520 69.5 6.9e-192 667.9
Sed05g0937 . 6 445 VOZ-9 Transcription Factor Family AT1G28520 54.1 1.2e-127 454.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004233 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39662 None None None None Sed TF