Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0279 ATGGGTGTTTTAATCGATCTTAATGCCACTGATGAAGATGATGCTCCTGATGTTTCTGGCTCCTCTGTTTCTTCTTCCTCTGCTTCTGCTTTGACTTCTTCCCCTTCTTCTGTTACGTCTTCGATTTGCTTGGAGCTATGGCATGCTTGTGCTGGCCCGATTGCGACTTTGCCCAAGAAAGGGAGTTTGGTTGTGTATTTTCCTCAAGGCCATTTGGAGCTGATGCAGGAATTTGGAGCTGCTGTGGCTTATGATCTTCCTCCACATATCCTCTGTCGTGTTATTGATGTTCAGCTTCATGCTGAGGCTGGGAGTGATGAGGTTTTTGCTCAGGTTTCGTTGTTTCCTGAAAACGATCAACTGAAGAACAAGTTGCCAGAAGATGTGGACAATGAGAGTGAGGAGGAGGATGCTGAAGGTGGCGAAAAGACAACAACACCCCACATGTTCTGCAAGACCCTTACTGCTTCAGATACTAGTACTCATGGAGGCTTCTCCGTCCCTCGACGTGCAGCCGAGGACTGCTTCCCTCCATTGGATTATAATCAACAGAGGCCTTCTCAAGAGCTTGTTGCTAAGGATCTCCTTGGGCTGAAATGGAAGTTTAGGCACATATATCGCGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCTTTTGTGAACAAAAAAAGACTTGTTTCGGGTGATGCCGTGCTTTTTCTTAGGGGCAATGATGGGGAATTAAGACTCGGGATTCGAAGAGCTGCACAGCTCAAAGGTGGTTCTTCCTTTTCTAATATTTGCAGTCAGCAGCTCAACTCTAGTAGTATCTTGGATGTGGTTAATGCTATATCTTCAAAAAGTTCCTTTAACGTCTACTACAATCCCAGAGCAACCTCTTCACAGTTTGTCTTGCCTTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTCAGGCTGAGTTTTGAAACTGAAGATGCCGCAGATCGAAGATACACTGGACATATAACTGGAGTTGGTGATGTGGATCCTATTAGGTGGTCAGGATCAAGATGGAGGTCTCTAATGGTGAGGTGGGACAATGGTGAAACTAACAGGCATTGCCGGGTTTCTCCGTGGGAGATCGAGCCCTCTGGTTCTGTTTCTGTGTCTAGCAACTTGGTTCCACCTGGTTTGAAAAGGAACAGAATAGGGCTCTCCCCCACAACACTACAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCCATAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAATACTCCTATGGATGGTGACGAAAACATTCGTCATCCACTCGAAAAGAGGAGATTGTTTCCTGGTTTACATGGTTCTGGGATACCTCTAATGAGAAATAATCCAAGAAACCCGCATATCAACGCTGAAACTGCCTCCCGGGGTATCGTGTTTGATGATTCCTTCCAATTCCACAAGGTCTTGCAAGGTCAAGAAATATTTCCTAGCCCATTGTATGGTAGGGCCATTGCCACCAATGAAGTCAAGGAAAGTGGTGGTTACGGTCTTGTCGACGGTGTTCGATTGTCTAGGTCTAATGATGGATGGCCCATGACAATGCAGTGTGAAAATTTTCTCACAGGTTCATCCATTCCTTCTGCACAAGTCTCATCACCATCTTCTGTATTCATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGTTTTAATTCACATAACCGTGGCAGTTTCTCAGAACAGAGGATTATGAACAAAAGCACATCCCATAATTCTGGTGCAGCATTTATGACTGACCATAGCTCGAATACCGAAGCCCCACAAGGCATACATCCCACTTCATCGGGCGAACAGAATCCGCTCAGCCTATCACATCCTTCTACAACATCACCAGCGTTCAATAAAGATCTGACTTCAACTTGCAAAGCTGACTGTAGATTGTTTGGTTTTTCATTAACAGAGGCTTCTCCAGCAACAACAACTCCAATTAATGTTGGAACACCCAATATTGGAGTACAATGTCCTTTGAATTTGAAGCCTCCATTGATGAGCAAGGTGGTCGGAAGCAACTGTACCAAAGTAAGCAACTTATCTGCCTGCGCCCTTGAGGCGATATATTTTTCGTAA 2151 44.86 MGVLIDLNATDEDDAPDVSGSSVSSSSASALTSSPSSVTSSICLELWHACAGPIATLPKKGSLVVYFPQGHLELMQEFGAAVAYDLPPHILCRVIDVQLHAEAGSDEVFAQVSLFPENDQLKNKLPEDVDNESEEEDAEGGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKGGSSFSNICSQQLNSSSILDVVNAISSKSSFNVYYNPRATSSQFVLPFHKFLKSINHSFSVGMRFRLSFETEDAADRRYTGHITGVGDVDPIRWSGSRWRSLMVRWDNGETNRHCRVSPWEIEPSGSVSVSSNLVPPGLKRNRIGLSPTTLQFPVPNGIGASDFGESIRFQKVLQGQEILGYNTPMDGDENIRHPLEKRRLFPGLHGSGIPLMRNNPRNPHINAETASRGIVFDDSFQFHKVLQGQEIFPSPLYGRAIATNEVKESGGYGLVDGVRLSRSNDGWPMTMQCENFLTGSSIPSAQVSSPSSVFMFQQSMVPVQSFNSHNRGSFSEQRIMNKSTSHNSGAAFMTDHSSNTEAPQGIHPTSSGEQNPLSLSHPSTTSPAFNKDLTSTCKADCRLFGFSLTEASPATTTPINVGTPNIGVQCPLNLKPPLMSKVVGSNCTKVSNLSACALEAIYFS 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1625074 1629861 + Sed0011628.2 Sed10g0279 726783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0279 716 FunFam Auxin response factor 313 384 - -
Sed10g0279 716 SUPERFAMILY DNA-binding pseudobarrel domain 145 259 IPR015300 -
Sed10g0279 716 Gene3D - 313 387 - -
Sed10g0279 716 MobiDBLite consensus disorder prediction 120 146 - -
Sed10g0279 716 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677(InterPro)
Sed10g0279 716 MobiDBLite consensus disorder prediction 598 639 - -
Sed10g0279 716 Pfam Auxin response factor 276 357 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed10g0279 716 CDD B3_DNA 148 250 IPR003340 GO:0003677(InterPro)
Sed10g0279 716 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677(InterPro)
Sed10g0279 716 MobiDBLite consensus disorder prediction 9 35 - -
Sed10g0279 716 Gene3D - 148 252 IPR015300 -
Sed10g0279 716 MobiDBLite consensus disorder prediction 15 35 - -
Sed10g0279 716 FunFam Auxin response factor 148 252 - -
Sed10g0279 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 667 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed10g0279 716 SMART B3_2 150 252 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0279 Sed-Chr10:1625074 Sed14g1493 Sed-Chr14:23266471 0.00E+00 dispersed
Sed10g0278 Sed-Chr10:1625074 Sed10g0279 Sed-Chr10:1625074 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39664 PF02362 B3 1.60E-21 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0279 K14486 - csv:101220018 1112.06