Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0285 ATGGCGTCGCAGCTGCTCTCACGCGCCACCCCCTTCGCCGGCGGCATTCCCACGCTCCGGAAGTTCCACGGAGAAGCCTCCGCCGGGAACAGCCACGTCGCCGTCTTCCAGAGGCCGATCGCCGACGGAGCCAATCTCATTTGGGGACGGCAGTTGCGCCCGTCTCTGCTTCTCGACAAGACTCCAATCTCGGCCAGACGGGACACGATTCGGCCTATTTCGGCGGCGGCTTCTTCTTCGCCCGCCGGAGGCAGCGATTCCGCCGGGGATGCGAAGGTTGCTCCGGTCGGGTTTTTCGAGAAGAATCCGACGTTGGTCACCGGATTCTTCTTCTTCATGTGGTATTTCTTGAACGTGATTTTCAATATCCTCAACAAGAAGATCTATAATTACTTTCCCTACCCTTATTTTGTGTCGGTGATCCATTTGTTAGTTGGGGTGGTGTATTGTTTGATCAGCTGGGTTGTTGGTCTTCCAAAGCGAGCGCCCATTGACGGAACCCTCCTGAAGTTGCTGATCCCTGTAGCTTTCTGTCATGCACTTGGCCATGTCACTAGCAATGTCTCATTTGCCGCTGTTGCTGTCTCATTCACACACACAGTCAAAGCTCTGGAACCGTTCTTTAATGCTGCCGCTTCTCAATTCATTTTGGGGCAATCCATTCCCATTACCTTATGGCTTTCATTGGCTCCCGTTGTCATTGGTGTGTCAGTGGCATCCTTAACTGAGCTTTCATTTAACTGGACTGGCTTCATTAGTGCTATGATTTCCAATATCTCCTTTACTTACAGAAGTATTTATTCAAAGAAAGCCATGACTGACATGGACAGCACCAACGTCTATGCTTATATTTCCATCATTGCTCTCCTTTTCTGCCTTCCACCTGCTATAATTGTGGAGGGGCCTCAACTGCTGAAGGTTGGTTTCAATGATGCCATAGCTAAAGTTGGTCTTACCAAATTCGTCTCAGATCTTTTCTTGGTGGGATTGTTTTATCACCTTTACAACCAGTTAGCAACCAACACCTTGGAGAGGGTGGCACCACTCACCCATGCTGTTGGAAATGTGCTGAAACGTGTATTTGTGATTGGATTCTCCATTATTGTCTTTGGTAACAAAATTTCAACACAGACTGGTATTGGAACCAGCATTGCAATTGCAGGAGTCGCAATTTACTCTTACATCAAGGCTAAGATGGAAGAAGAGAAACGAAAAACAAAGGTGGCTTAA 1230 48.37 MASQLLSRATPFAGGIPTLRKFHGEASAGNSHVAVFQRPIADGANLIWGRQLRPSLLLDKTPISARRDTIRPISAAASSSPAGGSDSAGDAKVAPVGFFEKNPTLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLISWVVGLPKRAPIDGTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSVASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALLFCLPPAIIVEGPQLLKVGFNDAIAKVGLTKFVSDLFLVGLFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAIAGVAIYSYIKAKMEEEKRKTKVA 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1688906 1693530 + Sed0006869.1 Sed10g0285 726789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0285 409 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 105 403 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed10g0285 409 SUPERFAMILY Multidrug resistance efflux transporter EmrE 149 242 - -
Sed10g0285 409 SUPERFAMILY Multidrug resistance efflux transporter EmrE 320 394 - -
Sed10g0285 409 PANTHER SOLUTE CARRIER FAMILY 35 98 397 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Sed10g0285 409 Pfam Triose-phosphate Transporter family 106 393 IPR004853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0285 Sed-Chr10:1688906 Sed10g0619 Sed-Chr10:4127415 3.40E-59 dispersed
Sed10g0285 Sed-Chr10:1688906 Sed07g2664 Sed-Chr7:42095070 1.60E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0285 K15283 - csv:101220728 708.753