Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0299 ATGGATGACGGTCACGACGACTACCGCGTTCTCCATGATGTTCCTCCGCTTCCTTCTGCCGCCGTCGTTGTTCCTCAACCACCTTTAGGATATTGTCCTACCTTGCAATCATATCTTTTATTGAATAACTCTTCTCGTGAACACTATTTTCCACATTCTTCCTCTTCTTCTTTTGTGTCTAAAGATGCTTGGAGTACTAAACTTGCAAGGACTAACAGAAAACTTGCTCGCCAAAAAACTCTTAGTTTAACTAAATCCTCCTCTTCTTCTTCCTCTTCGGGGTTCGGTATCTGTAGTAGTGATGAATATTCTAAACCAACTACGATAACCCATTACCCAAACACTGATTCAAAATCCAACCCTACTCGGAATCTCTTCACCTTTTGCACTCCAGATAACAAGATATTGAGGATGTTGCTGAAGAAAGAGCTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTCCCTAAGAGGGAAGCTGAAGAGAATCTTCCATTGTTGACTGATAAGGAAGGAATTCAAATTGTGATTAGAGATGTGAACTCAAACAGAAAATGGGCCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAAAACACAGGGGATTTCGTTAGACAAAATGGGCTGTCGATGGGTGATGTAATGACCCTTTACCAAGATGAATGCAAGAACCTCTACGTGTCGGTTGAAAAAGAGGAGAATGAATCAAGCATGGAAGAAAATGATGAGGAGATGAAGAATGGAACAGCAACAACTTACACAACAAACATGGATTTTCTTAAACAACACAAACAACAACAACAACAACATGATCGTCACGAACTACTCTCTTTAGCTCTCTTCAATGAACAACCAACCTCTTGCTACAACAACAACGACAACAACAACGACCTCGTAATTTCACAAAACACAGATAATTCTTCATACTATGAAAGATGGAGCAGCGCCTTCAGCTACAATATGAACAATAATAATGCTCGACGGCCAGCTGCAACAAAAGGGAACAACAACAACAACAATGTTTATAATGGGAAGGATCAATTAGTGGAAGATTTTCATGCCATTAACAATGACTTTGAAGATTGCTTTGAAGGCCTGGATACTCTGCCTGAAGTTAGTGGATTATTCAAGTTCCATCAAATAACATGA 1173 39.98 MDDGHDDYRVLHDVPPLPSAAVVVPQPPLGYCPTLQSYLLLNNSSREHYFPHSSSSSFVSKDAWSTKLARTNRKLARQKTLSLTKSSSSSSSSGFGICSSDEYSKPTTITHYPNTDSKSNPTRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPLLTDKEGIQIVIRDVNSNRKWAMKYKYWANNRSRMYVLENTGDFVRQNGLSMGDVMTLYQDECKNLYVSVEKEENESSMEENDEEMKNGTATTYTTNMDFLKQHKQQQQQHDRHELLSLALFNEQPTSCYNNNDNNNDLVISQNTDNSSYYERWSSAFSYNMNNNNARRPAATKGNNNNNNVYNGKDQLVEDFHAINNDFEDCFEGLDTLPEVSGLFKFHQIT 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1786244 1789182 + Sed0002352.1 Sed10g0299 726803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0299 390 Gene3D - 129 250 IPR015300 -
Sed10g0299 390 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 72 287 IPR044800 GO:0003700(InterPro)
Sed10g0299 390 CDD B3_DNA 139 235 IPR003340 GO:0003677(InterPro)
Sed10g0299 390 SMART B3_2 140 241 IPR003340 GO:0003677(InterPro)
Sed10g0299 390 Pfam B3 DNA binding domain 142 238 IPR003340 GO:0003677(InterPro)
Sed10g0299 390 SUPERFAMILY DNA-binding pseudobarrel domain 139 237 IPR015300 -
Sed10g0299 390 ProSiteProfiles B3 DNA-binding domain profile. 140 241 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0199 Sed-Chr7:1706225 Sed10g0299 Sed-Chr10:1786244 6.00E-27 dispersed
Sed09g0874 Sed-Chr9:28432319 Sed10g0299 Sed-Chr10:1786244 2.40E-27 dispersed
Sed10g0299 Sed-Chr10:1786244 Sed14g1463 Sed-Chr14:23086735 4.00E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39672 PF02362 B3 1.40E-16 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0299 K09287 - csv:105436043 306.605