Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0302 ATGAACGAAGAGGCTAATTCTTGGCTTAGGAGGACCAAGTTTTCTCACACGGTTTATCATCGTTGGGACTCATTAAGATTGAACCCTGTTCCTTTTGTGATCGAACCGAATCGAAACCCCGGCCTGAAATCGAGGCCTCAATCAACTTCATCTGCCCTGAAATCGAATCCGGATGTTTCGAAGATTCAAAGAAGTTTCATATCCAACAAGCAGAGGTCTTTGTCCCCTCTTCCAGAGAGCAACCTCTCTGAAGCTTTCAAGGAAGCAAAATCCTCAAGCAAGAGATTTTCAACTCCAACTCCTCAACTTCGGCCGAAGGAATTCTTGAACAAGCTATTGAACAAGGAACATCAAGATTCAAAATCGGCGAATTTGAAGCCATTGATGAATACCAGTCCATTGAAACACCTGGCTATGGCGAAAGGGGGTGATAAGTCGAAGTTCCGAAAGGACTTATCCTGGACCAAATATTTTGAGTCCGGTGGCGGAAGAGTCACCGCGGTCGAATCCGCCGATGATTGGAATGTTGATCTCTCCAAGTTGTTTCTTGGATTGAGGTTTGCTCATGGAGCTCATAGTCGTCTTTATCATGGAAAATACAAGGATGAACCTGTTGCTGTTAAGATAATTCGAGTGCCCGAGGATGACGAAAATGGAGTGCTTGGTGCTCGATTGGAGAAGCAATTCACCAGGGAAGTTACCCTTTTATCTCGTCTTTATCATCCAAATGTTATAAAGTTTGTAGCTGCCTGTAGGAATCCACCCGTTTACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGATCATACTTGCATAAGCTTGAGCACAGTCACGGATCTCTTCCTTTGCAAAAACTAATTGCAATTGCTTTGGATATCGCTCGTGGCATGGAATTCATTCATTCACAAGGCATAATTCATCGGGATCTTAAGCCCGAGAATGTTCTTATCGACGAGAATTTCCACTTGAAAATAGCCGATTTCGGTATAGCTTGTCCTGAGGCCTTTTTTGACCCATTGGCTGATGATCCAGGAACTTATCGATGGATGGCACCGGAGATGATCAAACACAAACCCTACGGTCGAAAGGTCGACGTGTACAGTTTTGGGCTTATGTTGTGGGAAATGGTGGCTGGCGTAATTCCTTACGAGGACATGACTCCGATTCAAGCCGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATCTCAAGTGATTGTCCATTGGCAATGCGAGCATTGATCGAGCAATGTTGGTCTGTAAATCCGGAGAAGAGACCCGATTTCTGGCAGGTGGTGAAGGTATTAGAGCAATTCGAGTCTTCGCTTGTTCGTGATGGGACACTGAATTTGTTAGGCAACCCTCTGTCTAGTTTCCATGATCATAAGAAAGGGCTCCTCCATTGGATACAAAAGTTAGGTCCTCTACATCCTGAAGGCTCACCCGTCCCCAAACCGAAATTCTCTTAA 1479 44.35 MNEEANSWLRRTKFSHTVYHRWDSLRLNPVPFVIEPNRNPGLKSRPQSTSSALKSNPDVSKIQRSFISNKQRSLSPLPESNLSEAFKEAKSSSKRFSTPTPQLRPKEFLNKLLNKEHQDSKSANLKPLMNTSPLKHLAMAKGGDKSKFRKDLSWTKYFESGGGRVTAVESADDWNVDLSKLFLGLRFAHGAHSRLYHGKYKDEPVAVKIIRVPEDDENGVLGARLEKQFTREVTLLSRLYHPNVIKFVAACRNPPVYCVITEYLSQGSLRSYLHKLEHSHGSLPLQKLIAIALDIARGMEFIHSQGIIHRDLKPENVLIDENFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVAGVIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSVNPEKRPDFWQVVKVLEQFESSLVRDGTLNLLGNPLSSFHDHKKGLLHWIQKLGPLHPEGSPVPKPKFS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1804740 1808783 + Sed0020942.1 Sed10g0302 726806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0302 492 SUPERFAMILY Protein kinase-like (PK-like) 167 439 IPR011009 -
Sed10g0302 492 ProSiteProfiles Protein kinase domain profile. 181 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0302 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0302 492 MobiDBLite consensus disorder prediction 41 80 - -
Sed10g0302 492 SMART serkin_6 181 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0302 492 MobiDBLite consensus disorder prediction 38 101 - -
Sed10g0302 492 FunFam Serine/threonine-protein kinase isoform 1 171 265 - -
Sed10g0302 492 PRINTS Tyrosine kinase catalytic domain signature 347 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0302 492 PRINTS Tyrosine kinase catalytic domain signature 366 388 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0302 492 PRINTS Tyrosine kinase catalytic domain signature 261 274 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0302 492 PRINTS Tyrosine kinase catalytic domain signature 410 432 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0302 492 PRINTS Tyrosine kinase catalytic domain signature 301 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0302 492 Gene3D Transferase(Phosphotransferase) domain 1 266 454 - -
Sed10g0302 492 PANTHER SERINE-THREONINE PROTEIN KINASE 74 441 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed10g0302 492 Pfam Protein tyrosine and serine/threonine kinase 188 439 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0302 492 CDD STKc_MAP3K-like 188 439 - -
Sed10g0302 492 Gene3D Phosphorylase Kinase; domain 1 169 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2264 Sed-Chr8:36241638 Sed10g0302 Sed-Chr10:1804740 4.90E-132 dispersed
Sed10g0302 Sed-Chr10:1804740 Sed14g1314 Sed-Chr14:22010268 1.40E-91 dispersed
Sed01g2111 Sed-Chr1:15831979 Sed10g0302 Sed-Chr10:1804740 5.00E-158 wgd
Sed10g0302 Sed-Chr10:1804740 Sed14g1459 Sed-Chr14:23070659 4.10E-224 wgd
Sed10g0302 Sed-Chr10:1804740 Sed08g2263 Sed-Chr8:36241638 2.70E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79802 PF07714 PK_Tyr_Ser-Thr 1.90E-57 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0302 - - - 0.0