Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0345 ATGGATAGTCATTGCAGAAAGGTTGTTGGGTTTCTTCAGTGTTTAGTCATTTCATTCTTCCTTTGTTCTTCTCCTCTGTTTTGTGATTCTGCAAATTCAATCACCAAGGGCAGCAGAGATTTAAGAGACAGTGCTAATGAAACCCTCATATCCGAAAAGAAGACCTACGAGTTGGGTTTCTTCAGCCCCAAAAATTCTTTGTCACGATATGTTGGTGTATGGTATCACAAGATTGAGGAACAGTCTGTTATTTGGGTAGCAAATAGAGATAAGCCACTTCTTAATAGAGACGGAGTTCTGAAAATCAGAGATGACGGGAACTTGGTCGTTCTGGACGGCAACAATGTCTCTATTTGGACGAGCAATATCACCGGGAATCTGTCTGATCCCAGAAACTTAACTCTACATGACAATGGAGAATTGGTTCTCTCGAGCAGAGAGAACGGGTTGAAAGTCCATTGGCGCAGTTTCGAACACCCTACAGATACATTTCTTCCAAACATGGAGGTGAAAGTGAACCCAAATTTGGGCGAGAAACGGATTTTTACGTCGTGGAAATCAGATACAGATCCGGCTGTCGGAAATTACAGTTTGGGCGTGGATCCTCGAGGAGCTGTACAAATTATCATTTGGAATGGGGAGAATCGAGCATGGAGAAGTGGCTTTTGGGATAAGCAGATTTTTTCTGGGATTCCAACCATGCGCTCAACGACATTGTATGGTTTCAAGGTTAACACCGAGCGTCGAGACGAAATAACTTTAAATTTTCATCCATTGAATAATTCTGATGAACTGAAGTTTCAGATACGATGGGATGGTAAAGAAGAAGAGCAACTATGGAATGAAGCGAATCGAGTATGGGACACCATTCGTTCACTACCTTCTAATGATTGTGATATCTATAATTTTTGTGGGGACTTTGGTATTTGTTCTGAAATAGGTAACACCAAGTGTGATTGCCCTCGAGGGTTTGTTCCCAAAAACGAAGTTCGATGGAAGAGAGGGATTTGGTCAGATGGGTGTAAGAGGGTGAGTCTATTGCTTCACCAGAGGATGAACATGAATCCAAATGGCACTGTTGAAGATGGTGAACAAGATGGGTTTTTTGATGTACCCTTTGTGAAATTGCCCGATTTTATAACTTCAGTATTTGTGGACTCTTGTGGAGATAGATGTGCCAACAGTTCTTCGTGTATTGCATATTCGGATGCTCCTGGAATTGGGTGCCTTACTTGGGATGGACCTTTAATTGATATTCAGAGATTTGATGGTGTTGGAAGTACTTTGAACATTCGTGTAGCTCATTCTGATTTGATTCTTAAAGATGTGGGGAGCAAGGGCAAATTGTCGACTGTTGCAATAGTATTGATATGTTTAGGAGGAGCAGCCGCCATAGCCGTATTAGCATTGCTGATATTCAAATTCAGAGGAAAAATAAATGCTTCACCCAATGCTGCTTCGAGTAGACCTCAGAACAACAATGAAGAACCAATGTTTGACCCGAGCAAGAGCAAAGAATTTTCAGCAGAGCTTTCAGGGCCATACGATTTAGGCAGGGAAGGCGAACAACTGAGTGGACCAGATTTGCCTATGTTTAACTTCAACTGTGTAGTTGTGGCGACCGATAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGTTTTGGCCCGGTATACAAGGGAAAGCTTCCATGTGGACAAGAAGTTGCCGTGAAGCGACTCTCGGTCCAGTCTGGTCAAGGTCTAGAAGAGTTCAAGAATGAGATTATACTGATAGGAAAGTTGCAGCATCGAAACCTTGTCCGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAATAGCTTGGATTGGTTTCTTTTTGATCCAAATAGGCAGGTGCTACTGGATTGGAAAAAACGGTTGTCAATCATCGAGGGAATTGCACGAGGACTGTTATACCTTCATCGAGACTCGAGACTTCTTATTATTCACAGAGATTTGAAAGCTAGCAACATTTTACTAGATGAAGACATGAATCCTAAGATATCAGATTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAACGAGGCAACAAATACAATTCGAGTTGTTGGCACATACGGCTACATGGCTCCAGAATATGCAATGGAAGGTTTATTTTCAGTGAAATCAGATGTCTATAGTTTTGGTGTGTTACTATTGGAATTAATCTGTGGTCGGAGGAACACTAGCTTTCGCTCAACCGAACACTTAACCCTTATTAGCTTTGCTTGGAAACTTTGGAATGAAGACAGAGCAATCGAACTTCTCGACCCGTCGATTCGCGATTCATCCTCTGAGAGTGAAGTATTGAAGTGCATACATGTAGCAATGTTGTGTATACAAGACTCCCCAGCTTATAGACCAACACTGCAGTCCTTAGTGATAATGCTGGAGAGTGAATCAACTACTCTGCCACAGCCAAGACAGCCCACGTACACTTCCACAAGAGCCTCAATCGATACCGACTTGTTTACAGACAGCCACGACATAAACATTGTATCATCAAACGACGTAACGGTAACAATGCTGGATGGTAGATAG 2595 42.35 MDSHCRKVVGFLQCLVISFFLCSSPLFCDSANSITKGSRDLRDSANETLISEKKTYELGFFSPKNSLSRYVGVWYHKIEEQSVIWVANRDKPLLNRDGVLKIRDDGNLVVLDGNNVSIWTSNITGNLSDPRNLTLHDNGELVLSSRENGLKVHWRSFEHPTDTFLPNMEVKVNPNLGEKRIFTSWKSDTDPAVGNYSLGVDPRGAVQIIIWNGENRAWRSGFWDKQIFSGIPTMRSTTLYGFKVNTERRDEITLNFHPLNNSDELKFQIRWDGKEEEQLWNEANRVWDTIRSLPSNDCDIYNFCGDFGICSEIGNTKCDCPRGFVPKNEVRWKRGIWSDGCKRVSLLLHQRMNMNPNGTVEDGEQDGFFDVPFVKLPDFITSVFVDSCGDRCANSSSCIAYSDAPGIGCLTWDGPLIDIQRFDGVGSTLNIRVAHSDLILKDVGSKGKLSTVAIVLICLGGAAAIAVLALLIFKFRGKINASPNAASSRPQNNNEEPMFDPSKSKEFSAELSGPYDLGREGEQLSGPDLPMFNFNCVVVATDNFSEENKLGQGGFGPVYKGKLPCGQEVAVKRLSVQSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNNSLDWFLFDPNRQVLLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEHLTLISFAWKLWNEDRAIELLDPSIRDSSSESEVLKCIHVAMLCIQDSPAYRPTLQSLVIMLESESTTLPQPRQPTYTSTRASIDTDLFTDSHDINIVSSNDVTVTMLDGR 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2118971 2124773 + Sed0020717.1 Sed10g0345 726849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0345 864 CDD STKc_IRAK 550 816 - -
Sed10g0345 864 Gene3D Phosphorylase Kinase; domain 1 519 619 - -
Sed10g0345 864 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544(InterPro)
Sed10g0345 864 Pfam Domain of unknown function (DUF3403) 817 864 IPR021820 GO:0004674(InterPro)
Sed10g0345 864 Gene3D - 33 157 IPR036426 -
Sed10g0345 864 MobiDBLite consensus disorder prediction 482 498 - -
Sed10g0345 864 SUPERFAMILY Protein kinase-like (PK-like) 529 842 IPR011009 -
Sed10g0345 864 ProSiteProfiles Protein kinase domain profile. 544 822 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0345 864 CDD EGF_CA 296 328 - -
Sed10g0345 864 SMART blect_4 40 160 IPR001480 -
Sed10g0345 864 Pfam PAN-like domain 364 419 IPR003609 -
Sed10g0345 864 ProSiteProfiles Bulb-type lectin domain profile. 34 156 IPR001480 -
Sed10g0345 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0345 864 MobiDBLite consensus disorder prediction 482 511 - -
Sed10g0345 864 Gene3D Transferase(Phosphotransferase) domain 1 620 833 - -
Sed10g0345 864 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 191 IPR036426 -
Sed10g0345 864 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 514 619 - -
Sed10g0345 864 Pfam D-mannose binding lectin 83 186 IPR001480 -
Sed10g0345 864 SMART serkin_6 544 815 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0345 864 PIRSF SRK 4 864 IPR024171 GO:0004674(InterPro)
Sed10g0345 864 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 620 823 - -
Sed10g0345 864 CDD B_lectin 44 160 IPR001480 -
Sed10g0345 864 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 36 828 - -
Sed10g0345 864 Pfam Protein tyrosine and serine/threonine kinase 547 813 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0345 864 CDD PAN_AP_plant 361 434 - -
Sed10g0345 864 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3102 Sed-Chr5:41214971 Sed10g0345 Sed-Chr10:2118971 5.50E-143 dispersed
Sed05g3103 Sed-Chr5:41214971 Sed10g0345 Sed-Chr10:2118971 9.50E-104 dispersed
Sed08g2319 Sed-Chr8:36564756 Sed10g0345 Sed-Chr10:2118971 2.60E-152 dispersed
Sed09g1563 Sed-Chr9:39188215 Sed10g0345 Sed-Chr10:2118971 1.20E-95 dispersed
Sed10g0345 Sed-Chr10:2118971 Sed14g1389 Sed-Chr14:22629481 0.00E+00 dispersed
Sed10g0345 Sed-Chr10:2118971 Sed10g0346 Sed-Chr10:2118971 0.00E+00 tandem
Sed10g0345 Sed-Chr10:2118971 Sed14g1388 Sed-Chr14:22629481 0.00E+00 wgd
Sed10g0345 Sed-Chr10:2118971 Sed04g3313 Sed-Chr4:43400275 2.90E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79803 PF07714 PK_Tyr_Ser-Thr 3.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0345 - - - 0.0