Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0347 ATGGCGGCCGACGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATCCTCTCCTCCGGCCACACCTTCGATCGCTCCTCCATCCAACGCTGGCTCGACGCCGGCCACCGGACTTGCCCAATTACCCAATTGCCCCTACCGGATAACCCATCTCTAATCCCTAACCACGCCCTTCGGAGTTTAATTTCTAATTTCAACCCTGTTTCTAATTCCCACCCATTTCCCCCAAATCCGCCCCCACAAACCCTAATCCCCATTTTGATTTCCCCTTCCTCCTCTCTCAATTCCAAGCTCGATTCCCTCAATCAACTCGCTAGGGTTTCCAAGCGCGACTCAGCCGTGAGGAGAAAACTGACCGAGTCAGGTGCCGTTTCGGCGGTTCTTAAGTGCGTTGGCTCCGACGATGTGCGCCTTCAAGAGAAGGCTCTGTCTCTGTTGCTGAATCTTAGTTTGGATGATGATAACAAAGTGGGGTTGGTTGCGGAAGGGGCTATTGGGTTAACCGTGGAGGCTCTTCGAGCCCAGTCTCCGGATTGTCGAGCCGTCGCCGCTACGATGCTGACGAGCTTAGCCGTTGTGGAGGTTAACAAGGCGACGATTGGGGCTTATCCTAATGCCATCCGGTCTCTGGTTTGTCTATTGTGTAATGGGAGCAATAGAGAGCAGAAGGAGGCCGCGACCGCGCTTTACGCTGTGTGTTCGTTTCCGGGCAACCGTGTGCGGGCTGTGGAATGTGGGGTTGTTCCAATTTTGCTTAAGATTGCGAATTCGGGTCTGGATAGAGCAATTGAGCTTCTGGGGTTGTTGGCAAAGTGCAGGGAAGGTCGAGAAGAGATGCAAAGATTCAATGGGAGTGTTGAGATTTTGAGCCGTGTGTTGAGAAATGGAGCTCCACGAGGGGTTCAATATGCTCTCTTAACGCTGAGTTCGCTTTGTTGCCATAGCCAACGAGCTTGCGAGGAAGCTAGAAGAGAGGGCGTTTTGGGAATGTGCATGTCATTGATGGATGATGATAATGAAAAGATTAGAGCAAATGCTGCAAATTTGGTTCATATACTGCGAGGAAACAACACATGA 1089 51.15 MAADDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPDNPSLIPNHALRSLISNFNPVSNSHPFPPNPPPQTLIPILISPSSSLNSKLDSLNQLARVSKRDSAVRRKLTESGAVSAVLKCVGSDDVRLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVEALRAQSPDCRAVAATMLTSLAVVEVNKATIGAYPNAIRSLVCLLCNGSNREQKEAATALYAVCSFPGNRVRAVECGVVPILLKIANSGLDRAIELLGLLAKCREGREEMQRFNGSVEILSRVLRNGAPRGVQYALLTLSSLCCHSQRACEEARREGVLGMCMSLMDDDNEKIRANAANLVHILRGNNT 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2128237 2129903 + Sed0010978.1 Sed10g0347 726851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0347 362 PANTHER U BOX DOMAIN-CONTAINING 4 358 - -
Sed10g0347 362 SUPERFAMILY ARM repeat 85 357 IPR016024 -
Sed10g0347 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 74 IPR013083 -
Sed10g0347 362 ProSiteProfiles U-box domain profile. 1 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed10g0347 362 SMART Ubox_2 5 69 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed10g0347 362 FunFam RING-type E3 ubiquitin transferase 1 74 - -
Sed10g0347 362 CDD RING-Ubox_PUB 4 52 IPR045210 -
Sed10g0347 362 SUPERFAMILY RING/U-box 4 69 - -
Sed10g0347 362 Gene3D - 267 362 IPR011989 -
Sed10g0347 362 SMART arm_5 319 359 IPR000225 GO:0005515(InterPro)
Sed10g0347 362 SMART arm_5 115 155 IPR000225 GO:0005515(InterPro)
Sed10g0347 362 SMART arm_5 276 317 IPR000225 GO:0005515(InterPro)
Sed10g0347 362 SMART arm_5 200 238 IPR000225 GO:0005515(InterPro)
Sed10g0347 362 SMART arm_5 156 196 IPR000225 GO:0005515(InterPro)
Sed10g0347 362 Gene3D - 203 266 IPR011989 -
Sed10g0347 362 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 126 168 IPR000225 GO:0005515(InterPro)
Sed10g0347 362 Gene3D - 84 202 IPR011989 -
Sed10g0347 362 Pfam U-box domain 3 69 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0347 Sed-Chr10:2128237 Sed14g0585 Sed-Chr14:5876462 6.60E-30 dispersed
Sed10g0347 Sed-Chr10:2128237 Sed08g2733 Sed-Chr8:39121108 2.60E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0347 K27970 - csv:101213883 540.806