Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0374 ATGGAGAATAACTCCTCCAAACTTGTTGTTTTCTTGCTTATAAGCTTCTTTTTCTTGAATCAGCTCCTTGTGTCCTCACAGCTTGATTATAGGTTCTATGATTCTTCTTGTCCCAACCTTTTAAAGATCGTCCGATATGGCGTCCGGATGGCAGTTTCGAATGATACTAGGATGCCTGCTTCTCTATTACGCCTTCATTTTCATGATTGTTTTGTCAACGGCTGTGATGGATCATTGTTGCTTGATGACACAAGCACATTTAAGGGGGAGAAAAATGCACTGCCAAATATAAACTCAGTTCGAGGCTATGAGGTCATTGACAATATAAAGGCTGTTTTAGAGAGAGCCTGCCCATCTATTGTCTCATGCACTGATATAGTAACTCTAGCAGCTAGAGAAGCTGTTTATCTTGCTGGAGGACCAACTTGGTCCGTTCCGCTTGGTCGCCGAGATGGCACCACTGCGAACGAGACTGAAGCCAATCGGCTGCCATCACCAGTGGAGCCATTGGAGAATATCATTGCAAAGTTCACTTCAAAGGGTCTTGATGTAAAGGATGTTGTTGCACTCTCAGGTGCACATACTTTCGGATTTGCCCGGTGCATGATGTTCAAACATAGGCTCTTCAACTTCAACGGCTCGGGAAATCCCGATCCAGAACTCGACGCAACACTGCGACAGACGTTACAGAGCACCTGTCCGAATCAAGTTGACTCCAACAACAATCTAGCCCCCTTGGACGCCTGCACGATCAACCGATTCGACAATGCGTATTACAGGAACTTGGTGAACAAGTCTGGGCTTCTGGAGTCAGACCAAGCTCTCATGAAAGACAAAACAACTTCTGATTTGGTGGTGAGCTACAGCAGGTACCCATATCTGTTTTATAGGGATTTTGGAGCTTCAATGGTGAAGCTGGCCAATATTGGGATCCTTACAGGCCAAAATGGAGAGATTAGGAAGAATTGCAGGGTGGTGAACTAA 984 45.33 MENNSSKLVVFLLISFFFLNQLLVSSQLDYRFYDSSCPNLLKIVRYGVRMAVSNDTRMPASLLRLHFHDCFVNGCDGSLLLDDTSTFKGEKNALPNINSVRGYEVIDNIKAVLERACPSIVSCTDIVTLAAREAVYLAGGPTWSVPLGRRDGTTANETEANRLPSPVEPLENIIAKFTSKGLDVKDVVALSGAHTFGFARCMMFKHRLFNFNGSGNPDPELDATLRQTLQSTCPNQVDSNNNLAPLDACTINRFDNAYYRNLVNKSGLLESDQALMKDKTTSDLVVSYSRYPYLFYRDFGASMVKLANIGILTGQNGEIRKNCRVVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2256507 2259007 - Sed0022621.1 Sed10g0374 726878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0374 327 FunFam Peroxidase 164 306 - -
Sed10g0374 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 Gene3D Peroxidase, domain 2 164 306 - -
Sed10g0374 327 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed10g0374 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Sed10g0374 327 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PANTHER PEROXIDASE 72-RELATED 16 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 Pfam Peroxidase 44 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 Gene3D - 31 327 - -
Sed10g0374 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed10g0374 327 FunFam Peroxidase 31 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1534 Sed-Chr1:11094649 Sed10g0374 Sed-Chr10:2256507 3.20E-66 dispersed
Sed05g1097 Sed-Chr5:10375138 Sed10g0374 Sed-Chr10:2256507 1.70E-96 dispersed
Sed10g0374 Sed-Chr10:2256507 Sed13g1017 Sed-Chr13:8299105 5.30E-79 dispersed
Sed14g1212 Sed-Chr14:21362100 Sed10g0374 Sed-Chr10:2256507 3.20E-65 dispersed
Sed01g0775 Sed-Chr1:5786803 Sed10g0374 Sed-Chr10:2256507 1.40E-67 transposed
Sed11g1210 Sed-Chr11:27905440 Sed10g0374 Sed-Chr10:2256507 8.70E-55 transposed
Sed10g0374 Sed-Chr10:2256507 Sed14g0821 Sed-Chr14:15904860 1.40E-164 wgd
Sed10g0374 Sed-Chr10:2256507 Sed04g3293 Sed-Chr4:43300867 1.10E-56 wgd
Sed10g0374 Sed-Chr10:2256507 Sed05g2006 Sed-Chr5:33317271 4.80E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0374 K00430 - csv:101218459 572.392