Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0376 ATGGGTTGGTTGCGTAACATCTCCTTCACTCCCTCTTCCCTCGTTAGGTTTTCCGGCGCTGGCGGCGGCGGCGGCGATTCTAGCGGCTCCGACGATCACAATGATCGGAGAATCGTTTGGCGATTTGGGGCCTCTAGGGTTTCGCGCCAAAGGAAGCTTCGGAACCTGAGCGGCCGTGAACGCGCCGCTGCTTCTTTGCCCAAATGGTCCGATTCTACGCCCGAGCCGGTTTCCTTCTCGCGATCGCCGAGCTCCGACCGTGCTGTCCCCTTGCCGCTACCGGAGGTTTCGCCGGCGTTTCTTCAGCGCCGTGATGGGAATTTGAATTCTGGAATTGGAGATGGGGATTGCCCTCTTCCGTCCCCCAAGGGCTTGCGGGGCCGGGCCGGGGATGAGCGCGATTTCGATAGAGATAGAGCTGCACCGGCTCTTAAGATTGGTGGCGGGGTTTCTGCGACTGCTCCGATGAAAAGCATATTTGATTCCCGGGAGAGGCAGAAGCAAGAAGATCAGGTTGAGACAAAGCTGTCTAGAAGGGTGAGTCAAGAGTCAACAGGTCATCCTGTGAGATATCGGGACAGTTTCTGGATTGATGTTCCGAGTAGGAGTGCTCCTACCAGTCCTCTTGCAAGTCCTACAGTCAGTCCCCAAAGGACTAGTTCCGGTAACCTTTCGAATTTCAATCATGTGGCAAATTTTCATTATGCGGCGGTTCCGGTAGGAAATCATGTCTGGTCTGCACCTGAGCTGCCATCTTCGGGCTTGATGCGGGGGGTTCCTCCTGCATTCTTTGATGGCTCCACTTTTAGCTGTGAGAGTTCTCCCATGCATAGCCCTAGAAGGCAAAGTCCAAGAGGTAGAAGTCCTCGCAGAGATCCGAGAAGTCCAACGGGGGCTGCACGTCGTGAAAATGGTGGTCCTGTGAGTGTCCACCCTTTACCTCTTCCTCCTGGTGTGCCAATGCCTTCACCATCAACGCCAATGCCTTCTCCATCAGCCCCATTGCCTTTACCATCAACCTCAACGGCTTCATCATCCCCATTGCCTTTGTCATCAGCTTCAATTACACGAGCTAACTCTAAAACTGAGGCAATCTCAATGAAAAATCAATGGCAAAAAGGTAAGCTTATCGGCCGGGGCACATTTGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGATCTTTATGTGCAATGAAGGAAGTTGAATTATTTCATGATGACCCAAAATCGGCTGAATGTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTACGGCAGTGATATTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATACGTCCGTGATCATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATCCTCTCCGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATCAAAGGTGCTAATTTGCTTGTAGACTCTTCTGGGGTTGTCAAGCTGGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTGTCTGTGATGCAGAAAGATAACAACTCTGATCTTGCCCTAGCTGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACCGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATGAAAGATACCCCATCAATACCTGAATCATTATCATATGAAGCTACAGATTTCTTAAAATGCTGCTTTCGAAGAAATCCTGCAGAGAGGCCGACTGCTGCCATGCTGCTCGAACATCCGTTTATGAAAAACTTGCAGCATCAAGATGCTTCATCTTGCTCTCACGCCGTTTCGGGAGCAAATTTGGTGGACAAATGCTATAGCCCAAGTGAACAATATTCGAGTAAATTCGATCAATCCATGTTTCCAAGCTCACAAAGTTCCAAGGGAAAGCCCGCTGCTGAAAGTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTCATTCTCCTCGTTCTACCCTTGAGGCTCTTCCAATACTGTCTCCTCGACGCTCGGTTCACAATGTGAATTCCCCTGCAAATGCGCTCGGATTTGTGAATCAAACCAACAAGAAGAACCATATCTAA 2238 48.57 MGWLRNISFTPSSLVRFSGAGGGGGDSSGSDDHNDRRIVWRFGASRVSRQRKLRNLSGRERAAASLPKWSDSTPEPVSFSRSPSSDRAVPLPLPEVSPAFLQRRDGNLNSGIGDGDCPLPSPKGLRGRAGDERDFDRDRAAPALKIGGGVSATAPMKSIFDSRERQKQEDQVETKLSRRVSQESTGHPVRYRDSFWIDVPSRSAPTSPLASPTVSPQRTSSGNLSNFNHVANFHYAAVPVGNHVWSAPELPSSGLMRGVPPAFFDGSTFSCESSPMHSPRRQSPRGRSPRRDPRSPTGAARRENGGPVSVHPLPLPPGVPMPSPSTPMPSPSAPLPLPSTSTASSSPLPLSSASITRANSKTEAISMKNQWQKGKLIGRGTFGSVYVASNRENGSLCAMKEVELFHDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVRDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPSIPESLSYEATDFLKCCFRRNPAERPTAAMLLEHPFMKNLQHQDASSCSHAVSGANLVDKCYSPSEQYSSKFDQSMFPSSQSSKGKPAAESVIGPLSHHETSDLTVMSRHSPRSTLEALPILSPRRSVHNVNSPANALGFVNQTNKKNHI 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2263683 2269265 - Sed0025773.2 Sed10g0376 726880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0376 745 ProSitePatterns Protein kinases ATP-binding region signature. 377 400 IPR017441 GO:0005524(InterPro)
Sed10g0376 745 Gene3D Transferase(Phosphotransferase) domain 1 367 666 - -
Sed10g0376 745 ProSiteProfiles Protein kinase domain profile. 371 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0376 745 MobiDBLite consensus disorder prediction 103 187 - -
Sed10g0376 745 MobiDBLite consensus disorder prediction 160 177 - -
Sed10g0376 745 MobiDBLite consensus disorder prediction 269 354 - -
Sed10g0376 745 SMART serkin_6 371 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0376 745 MobiDBLite consensus disorder prediction 667 691 - -
Sed10g0376 745 Pfam Protein kinase domain 372 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0376 745 MobiDBLite consensus disorder prediction 203 222 - -
Sed10g0376 745 MobiDBLite consensus disorder prediction 337 354 - -
Sed10g0376 745 SUPERFAMILY Protein kinase-like (PK-like) 352 677 IPR011009 -
Sed10g0376 745 MobiDBLite consensus disorder prediction 310 336 - -
Sed10g0376 745 MobiDBLite consensus disorder prediction 126 141 - -
Sed10g0376 745 MobiDBLite consensus disorder prediction 71 85 - -
Sed10g0376 745 MobiDBLite consensus disorder prediction 53 91 - -
Sed10g0376 745 FunFam Mitogen-activated protein kinase kinase kinase 5 368 669 - -
Sed10g0376 745 MobiDBLite consensus disorder prediction 667 682 - -
Sed10g0376 745 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 134 638 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0376 Sed-Chr10:2263683 Sed10g1296 Sed-Chr10:28472498 8.50E-133 dispersed
Sed10g0375 Sed-Chr10:2263683 Sed10g0376 Sed-Chr10:2263683 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79818 PF00069 Pkinase 8.00E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0376 - - - 0.0