Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0376 | ATGGGTTGGTTGCGTAACATCTCCTTCACTCCCTCTTCCCTCGTTAGGTTTTCCGGCGCTGGCGGCGGCGGCGGCGATTCTAGCGGCTCCGACGATCACAATGATCGGAGAATCGTTTGGCGATTTGGGGCCTCTAGGGTTTCGCGCCAAAGGAAGCTTCGGAACCTGAGCGGCCGTGAACGCGCCGCTGCTTCTTTGCCCAAATGGTCCGATTCTACGCCCGAGCCGGTTTCCTTCTCGCGATCGCCGAGCTCCGACCGTGCTGTCCCCTTGCCGCTACCGGAGGTTTCGCCGGCGTTTCTTCAGCGCCGTGATGGGAATTTGAATTCTGGAATTGGAGATGGGGATTGCCCTCTTCCGTCCCCCAAGGGCTTGCGGGGCCGGGCCGGGGATGAGCGCGATTTCGATAGAGATAGAGCTGCACCGGCTCTTAAGATTGGTGGCGGGGTTTCTGCGACTGCTCCGATGAAAAGCATATTTGATTCCCGGGAGAGGCAGAAGCAAGAAGATCAGGTTGAGACAAAGCTGTCTAGAAGGGTGAGTCAAGAGTCAACAGGTCATCCTGTGAGATATCGGGACAGTTTCTGGATTGATGTTCCGAGTAGGAGTGCTCCTACCAGTCCTCTTGCAAGTCCTACAGTCAGTCCCCAAAGGACTAGTTCCGGTAACCTTTCGAATTTCAATCATGTGGCAAATTTTCATTATGCGGCGGTTCCGGTAGGAAATCATGTCTGGTCTGCACCTGAGCTGCCATCTTCGGGCTTGATGCGGGGGGTTCCTCCTGCATTCTTTGATGGCTCCACTTTTAGCTGTGAGAGTTCTCCCATGCATAGCCCTAGAAGGCAAAGTCCAAGAGGTAGAAGTCCTCGCAGAGATCCGAGAAGTCCAACGGGGGCTGCACGTCGTGAAAATGGTGGTCCTGTGAGTGTCCACCCTTTACCTCTTCCTCCTGGTGTGCCAATGCCTTCACCATCAACGCCAATGCCTTCTCCATCAGCCCCATTGCCTTTACCATCAACCTCAACGGCTTCATCATCCCCATTGCCTTTGTCATCAGCTTCAATTACACGAGCTAACTCTAAAACTGAGGCAATCTCAATGAAAAATCAATGGCAAAAAGGTAAGCTTATCGGCCGGGGCACATTTGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGATCTTTATGTGCAATGAAGGAAGTTGAATTATTTCATGATGACCCAAAATCGGCTGAATGTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTACGGCAGTGATATTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATACGTCCGTGATCATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATCCTCTCCGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATCAAAGGTGCTAATTTGCTTGTAGACTCTTCTGGGGTTGTCAAGCTGGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTGTCTGTGATGCAGAAAGATAACAACTCTGATCTTGCCCTAGCTGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACCGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATGAAAGATACCCCATCAATACCTGAATCATTATCATATGAAGCTACAGATTTCTTAAAATGCTGCTTTCGAAGAAATCCTGCAGAGAGGCCGACTGCTGCCATGCTGCTCGAACATCCGTTTATGAAAAACTTGCAGCATCAAGATGCTTCATCTTGCTCTCACGCCGTTTCGGGAGCAAATTTGGTGGACAAATGCTATAGCCCAAGTGAACAATATTCGAGTAAATTCGATCAATCCATGTTTCCAAGCTCACAAAGTTCCAAGGGAAAGCCCGCTGCTGAAAGTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTCATTCTCCTCGTTCTACCCTTGAGGCTCTTCCAATACTGTCTCCTCGACGCTCGGTTCACAATGTGAATTCCCCTGCAAATGCGCTCGGATTTGTGAATCAAACCAACAAGAAGAACCATATCTAA | 2238 | 48.57 | MGWLRNISFTPSSLVRFSGAGGGGGDSSGSDDHNDRRIVWRFGASRVSRQRKLRNLSGRERAAASLPKWSDSTPEPVSFSRSPSSDRAVPLPLPEVSPAFLQRRDGNLNSGIGDGDCPLPSPKGLRGRAGDERDFDRDRAAPALKIGGGVSATAPMKSIFDSRERQKQEDQVETKLSRRVSQESTGHPVRYRDSFWIDVPSRSAPTSPLASPTVSPQRTSSGNLSNFNHVANFHYAAVPVGNHVWSAPELPSSGLMRGVPPAFFDGSTFSCESSPMHSPRRQSPRGRSPRRDPRSPTGAARRENGGPVSVHPLPLPPGVPMPSPSTPMPSPSAPLPLPSTSTASSSPLPLSSASITRANSKTEAISMKNQWQKGKLIGRGTFGSVYVASNRENGSLCAMKEVELFHDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVRDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPSIPESLSYEATDFLKCCFRRNPAERPTAAMLLEHPFMKNLQHQDASSCSHAVSGANLVDKCYSPSEQYSSKFDQSMFPSSQSSKGKPAAESVIGPLSHHETSDLTVMSRHSPRSTLEALPILSPRRSVHNVNSPANALGFVNQTNKKNHI | 745 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2263683 | 2269265 | - | Sed0025773.2 | Sed10g0376 | 726880 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0376 | 745 | ProSitePatterns | Protein kinases ATP-binding region signature. | 377 | 400 | IPR017441 | GO:0005524(InterPro) | |
Sed10g0376 | 745 | Gene3D | Transferase(Phosphotransferase) domain 1 | 367 | 666 | - | - | |
Sed10g0376 | 745 | ProSiteProfiles | Protein kinase domain profile. | 371 | 632 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 103 | 187 | - | - | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 160 | 177 | - | - | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 269 | 354 | - | - | |
Sed10g0376 | 745 | SMART | serkin_6 | 371 | 632 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 667 | 691 | - | - | |
Sed10g0376 | 745 | Pfam | Protein kinase domain | 372 | 632 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 203 | 222 | - | - | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 337 | 354 | - | - | |
Sed10g0376 | 745 | SUPERFAMILY | Protein kinase-like (PK-like) | 352 | 677 | IPR011009 | - | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 310 | 336 | - | - | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 126 | 141 | - | - | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 71 | 85 | - | - | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 53 | 91 | - | - | |
Sed10g0376 | 745 | FunFam | Mitogen-activated protein kinase kinase kinase 5 | 368 | 669 | - | - | |
Sed10g0376 | 745 | MobiDBLite | consensus disorder prediction | 667 | 682 | - | - | |
Sed10g0376 | 745 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 134 | 638 | IPR050538 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0376 | Sed-Chr10:2263683 | Sed10g1296 | Sed-Chr10:28472498 | 8.50E-133 | dispersed | |
Sed10g0375 | Sed-Chr10:2263683 | Sed10g0376 | Sed-Chr10:2263683 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79818 | PF00069 | Pkinase | 8.00E-69 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0376 | - | - | - | 0.0 |