Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0392 | ATGGCCGATTTCCAGACCTCGACTCAACGAGCCAAATGGATCCTGACTCCTCACGAGCTGGTTAGCAGGTACAAAGCTGCTAATCAGAGAGCAATCGAAGCTCTGGGGAAGTTTGGAGCAACACTAATGGAAGTAGATGCTGACGGATCATTGTCCTATCCAAACCCCCTGATAAATTCAAAAGATAAATCTGACAAACATTCTCGCCCCAAAGCTTTGAGTATCGAAGAAGAGCAATTTATGCGAGTATTCTACGAAAACAAACTTCAAGAAGTATGCAACAATTTTCATTTTCCTCATAAAATCCAGGCAACAGCTCTTATATATTTTAAAAGATTCTACCTACAATGGTCTGTGATGCAACATAATCCCAAAAATGTGATGTTAACCTGCATTTATGCAGCTTGTAAGATAGAAGAAAATCACGTCTCAGCTGAGGAGCTTGGTAAGGGGATTTCACAGGATCATCAAATTATTCTCAACTATGAGATGATAGTTTATCAGAGTCTGGAATTTGATCTTATTGTTTATGCACCTTACCGATCAGTTGAAGGCTATGTACATGATATGGAGGAACTCTTCCACGAGAATGCTGAAATGCTTCAAATGCTGAAGGAAACAGCTTCGTTAGAGGTTGATAAAATTATGTTAACAGATGCCCCACTTCTCTTCCCTCCCGGGCAGTTAGCATTGGCTGCATTGCGCAGATCAAATGAAGTTCACGGAGTTATTGATTTTGAAAGATACCTGAATAGTATTCTCTCTCGCCAGAATTCTGCGCATACAATTTCGGAGCTCTATGAGCGTTTAAATTCAGTTGACTCGTGGGTCAATAGATATGCATTCCCTTCAGAAAAGGATTTAAAGCACATCAACAGAAAATTAAAATCTTGCTGGGGACTGGGCTCCAATGACGAGAGTAAAAAAAGGGATAAGAAATCAAAGCACAAATCAAAGAAGAGTTCGAATGAAATGCAAAATATGCCGTTGCACAATTAG | 999 | 39.84 | MADFQTSTQRAKWILTPHELVSRYKAANQRAIEALGKFGATLMEVDADGSLSYPNPLINSKDKSDKHSRPKALSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHNPKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSVEGYVHDMEELFHENAEMLQMLKETASLEVDKIMLTDAPLLFPPGQLALAALRRSNEVHGVIDFERYLNSILSRQNSAHTISELYERLNSVDSWVNRYAFPSEKDLKHINRKLKSCWGLGSNDESKKRDKKSKHKSKKSSNEMQNMPLHN | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2373297 | 2381221 | - | Sed0001919.2 | Sed10g0392 | 726896 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0392 | 332 | SUPERFAMILY | Cyclin-like | 67 | 176 | IPR036915 | - | |
Sed10g0392 | 332 | CDD | CYCLIN_AcCycH_rpt2 | 177 | 298 | - | - | |
Sed10g0392 | 332 | SUPERFAMILY | Cyclin-like | 179 | 300 | IPR036915 | - | |
Sed10g0392 | 332 | Gene3D | - | 63 | 175 | - | - | |
Sed10g0392 | 332 | MobiDBLite | consensus disorder prediction | 302 | 332 | - | - | |
Sed10g0392 | 332 | Pfam | Cyclin C-terminal domain | 179 | 274 | IPR031658 | - | |
Sed10g0392 | 332 | FunFam | cyclin-H1-1 | 63 | 175 | - | - | |
Sed10g0392 | 332 | PANTHER | CYCLIN | 9 | 322 | IPR043198 | GO:0000079(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0016538(InterPro)|GO:0016538(PANTHER)|GO:0070816(PANTHER)|GO:0070985(PANTHER) | |
Sed10g0392 | 332 | Pfam | Cyclin, N-terminal domain | 72 | 174 | IPR006671 | - | |
Sed10g0392 | 332 | SMART | cyclin_7 | 87 | 168 | IPR013763 | - | |
Sed10g0392 | 332 | Gene3D | - | 177 | 279 | - | - | |
Sed10g0392 | 332 | FunFam | Cyclin h | 177 | 279 | - | - | |
Sed10g0392 | 332 | CDD | CYCLIN_AcCycH_rpt1 | 3 | 174 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0391 | Sed-Chr10:2373297 | Sed10g0392 | Sed-Chr10:2373297 | 2.00E-190 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0392 | K06634 | - | csv:101220754 | 598.201 |