Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0406 ATGACTTTGTTCTTGATCGTTTTGATCGCTATTTTCTCGGATTCTTTATCAATCGCCGATAAGATAACATCCTGCGAAAACTGGAATTCGGATTTTGTGCCCTATCCGTTTGGATTCTCAAACACGAGCGCAATCAGATTGAACTGCAGCGAAAATGGCGAGATTCAAATTGGAAGATTCAAGGTACAGAACATTACTGAGAAGAACATCCTCATCAAACTTCCTGTAGGCGGCAATAGCTCTATCCATTCGATTTCGGAACTGTTTGGCAAAAACTACAAGCCTACTCTCAGCAACAGTCTCCTCTTGAATTGTACCGATGGATCTCTTTGGTGCGGAAGATGGGCCAATTTCACTCTGAATCAGACTGAGAACAATGGATTTACAAGCAATAGTTCCGGCTGCTTCGTCGAGACCGAGCCAAATGGCGGATTGTTGCCTTCTTTCGGCAAATGCCAGTCACTTTTGTCTTCTGCATTTGTTAGTTCTGCATCAGAATTGAACTCTTCGTTGGAGGTCCAGTTTGGGGTCATTGAGTTAGAGTGGTGGATTTCAGTCTTGCCTGTCCGATGCTCAGAAAATGCTAACTCAACCATTATCAACTCGACGATCCACCACCAAGGATTTCGTTGCCAGTGCATAGAAGGGTTTGAAGGAAATGCATACATCGACCATGGCTGCCGGAAAGTTTGTCACCAGTGCAGTCCTAGTCCTACAATATATGTTGCTAGCCGATTCAGCGGAAACAAAGTTGCTGTTCTAATTACAGGTGTTTTTGTTGGAGCTTTTCTAATGGCTGTCCTCACCCTTATCTGTTACTGCATCCGCCGCCGCTCGATGTGTCTGAAAGGTCAGATGAGTGCAAAGCGGCTTCTAAGCGAGGCTGCTGGAAATTCCAGTGTTACTTTATATCCCTTTAAAGAAATAGAAAGAGCCACTAATGGCTTCTCTGAGAAACAAAGGCTGGGAACTGGAGCTTTTGGTACAGTCTATGCAGGAAAGGTTCATGAGGATGAGTGGGTTGCTGTAAAAAGAATAAAAAATAGAGACCACAATAGTATTGACCAGGTCATGAATGAGATAAAACTACTATCCTCCGTGAGCCACCCGAATCTAGTCCGCTTGCTCGGTTGCTGCATTGAAGAAGGCCAACAGATCCTTGTCTATGAGTTTATGCCCAATGGAACTCTTTCTCAACATCTTCAAAGAGAGCGCGGAAATGGCCTTCCATGGACGACGAGGCTCACCATTGCAGCCGAAACTTCTCGTGCAATCGCATACCTTCATTCTGCCGTGCACCCACCAATATATCACAGAGACGTCAAATCGAGCAATATACTTCTGGATCATAATTTCAAATCAAAAGTTGCAGATTTTGGTCTCTCTAGACTTGGTATGACAGAAATATCACACGTCTCAACAGCTCCACAAGGAACCCCGGGCTATGTTGACCCACAATACCATCAAAATTTCTATCTTTCAGATAAAAGCGACGTTTATAGTTTTGGAGTAGTCCTAGTAGAGATAATAACAGCACTGAAAGTGGTCGATTTCACTCGCCCCCAAAGCGACATAAACTTAGCTGCACTTGCCATTGATAGGATTGGAAGAGGTTCTGTGGATGAACTTATCGATCCTTTCCTCGAGCCAAATAGAGATGCTTGGACCCTATACTCTATTAACAAGGTTGCTGAGCTCGCATTTAGATGCCTTGCTTTTCATAGCGACATGAGGCCTTCGATGACAGAAGTAGCAGAGGAACTAGAATGCATAAGACTCAGCGGGTGGACATCGATGGAGGAGCATTTCTGCACAGCATCATCAGTGGGTTCGGCTTGCTCGTCTCCTCGTAGCATAAGCGAGAGATCCGTAAGTAGCATTACGATTAAGAAGGCCGGGCTTCTTGCAGCACTGGGGAGCCAGAGATTGGTAATCCCACCAGAGAACAATCATCAAAAGGAATATCTGCCTCCTGTAGAGGAGATTATGGATAGTTCCCCAGTTTCTATACAGGATCCTTGGTTAAGTGAACAAAGCTCACCTTCAACAAATAGTTTATTGGGTAATATAGTAAGGTGA 2079 44.44 MTLFLIVLIAIFSDSLSIADKITSCENWNSDFVPYPFGFSNTSAIRLNCSENGEIQIGRFKVQNITEKNILIKLPVGGNSSIHSISELFGKNYKPTLSNSLLLNCTDGSLWCGRWANFTLNQTENNGFTSNSSGCFVETEPNGGLLPSFGKCQSLLSSAFVSSASELNSSLEVQFGVIELEWWISVLPVRCSENANSTIINSTIHHQGFRCQCIEGFEGNAYIDHGCRKVCHQCSPSPTIYVASRFSGNKVAVLITGVFVGAFLMAVLTLICYCIRRRSMCLKGQMSAKRLLSEAAGNSSVTLYPFKEIERATNGFSEKQRLGTGAFGTVYAGKVHEDEWVAVKRIKNRDHNSIDQVMNEIKLLSSVSHPNLVRLLGCCIEEGQQILVYEFMPNGTLSQHLQRERGNGLPWTTRLTIAAETSRAIAYLHSAVHPPIYHRDVKSSNILLDHNFKSKVADFGLSRLGMTEISHVSTAPQGTPGYVDPQYHQNFYLSDKSDVYSFGVVLVEIITALKVVDFTRPQSDINLAALAIDRIGRGSVDELIDPFLEPNRDAWTLYSINKVAELAFRCLAFHSDMRPSMTEVAEELECIRLSGWTSMEEHFCTASSVGSACSSPRSISERSVSSITIKKAGLLAALGSQRLVIPPENNHQKEYLPPVEEIMDSSPVSIQDPWLSEQSSPSTNSLLGNIVR 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2510059 2515558 + Sed0013864.1 Sed10g0406 726910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0406 692 ProSiteProfiles Protein kinase domain profile. 316 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0406 692 FunFam Wall-associated receptor kinase-like 20 392 601 - -
Sed10g0406 692 Gene3D Transferase(Phosphotransferase) domain 1 392 605 - -
Sed10g0406 692 SMART serkin_6 316 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0406 692 MobiDBLite consensus disorder prediction 669 692 - -
Sed10g0406 692 Pfam Protein tyrosine and serine/threonine kinase 319 588 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0406 692 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 679 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed10g0406 692 Gene3D Phosphorylase Kinase; domain 1 278 391 - -
Sed10g0406 692 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524(InterPro)
Sed10g0406 692 FunFam Wall-associated receptor kinase-like 14 283 391 - -
Sed10g0406 692 SUPERFAMILY Protein kinase-like (PK-like) 296 589 IPR011009 -
Sed10g0406 692 MobiDBLite consensus disorder prediction 667 692 - -
Sed10g0406 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0586 Sed-Chr2:43527057 Sed10g0406 Sed-Chr10:2510059 3.20E-78 dispersed
Sed08g0367 Sed-Chr8:2214851 Sed10g0406 Sed-Chr10:2510059 3.30E-74 dispersed
Sed08g2196 Sed-Chr8:35825832 Sed10g0406 Sed-Chr10:2510059 1.00E-73 dispersed
Sed10g0406 Sed-Chr10:2510059 Sed14g0797 Sed-Chr14:14053184 2.00E-301 dispersed
Sed10g0406 Sed-Chr10:2510059 Sed14g0796 Sed-Chr14:14053184 2.00E-301 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79819 PF07714 PK_Tyr_Ser-Thr 1.80E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0406 - - - 0.0