Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0422 ATGGGAATTGCAAAAGGTCCATTAATTTTATGCAATAAGCTTATAACCAATTGTCCAAATTATTATTATTCTTCTATGTCCCAAGATTATCATCCTCATCAAGGATTCTTCACCTTCTCTAATGCCTTGGACAAGTCCAATTCCTCCACCCTCCCCCACCAGATCCGCCGTGATAAGCTCTTCTCCGATCCCCTTCCGCCGTCTATGGCGGCCGGAATCGACGACCACCACCACCACCTCCACCATGTCTATGCTGCCTCACCTAGTGGGGGGACCATGTTATCAGACATGTTCAATTTCACTCCAACTGCATCCCCGACCCCGGCTCCGCTTGAATTCTCCGACAATTTTCGAGCTTTACGACCGCCCTCCTCCGCCGCGGCCATGCAGCTTTTCTTGATGAACCCTCCTCCCCCTCCACCCCCGCGGTCGCCCTCGCCTCCCTCTGCCTCCTCCACTCTCCACATGCTCCTCCCGAACCCGCCTTCTGACCCTCTTCAGGGTTTCGAAGGCGGTGGTGTCGGAGATCAAGGGAATTTTGGTCAATTCTCCGTCGTCGAAAGTCAAGGGCTTTCGCTCTCACTTCACTCGTCCTCCTTACAACACTTGAAGGATGTCACGGCCACCGCGAAAGCCGACGAGTTTCGAATTAGGGATGGGGATCAGATGATGTATAATTACAACAACAACAACAACAACAACCAAGTCCATGGTGAGGGAGGGAGTGGATCAACATCCTCAATTTTGCAATATTCTTTTAGAAATAATTCAGAGAATTCTCCTCATAGCTTTCAAGCTAATTCACAAATGAATCCAAACCATCAAGTTCATGTCGGATTTGGCTCATCTTTGGGAGGTGTAAATCATGTGTTGAGGACTTCAAAATATGTCCAAGCTGCTCAAGAATTGCTTGAGGAATTTTGTAGTGTTGGAAGGGTTCAATTGAAGAAGAACAAATTCAGTCTAAAGCAAAACCCCAATCCTAGTACCACCACGGCCGCCACCGGAAGCGGCGGCACCGGTGGCGCCTCATCGTCGTCGAAGAATCAACCTCCCCTATCAGCCACTGATAGAATTGAGCATCAAAGGAGAAAGGTCAAACTATTATCCATGCTTGATGAGGTTGAGCGTAGATACAACATGTACCGCGAGCAAATGCAAATGGTGGTTAACTCATTCGACATGGTGATGGGGTACGGGGCAGCAGCGCCATACACGACGCTTACGCAGAAGGCGATGTCGAGGCACTTCCGCTGCCTAAAAGAAGCGATAACCGAGCAGTTAAAGCAGAGCTACGAGGCGCTAGGGGAGAAGGGAGGATCCGGAGGATCGGGAGTGACAAAGGGCGAGACGCCAAGGCTGAAGCTTCTCGAGCAAAGCCTTCGCCAACAAAGGGCTTATCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCACAACGTGGCCTCCCTGAACGATCTGTCAACATTCTCAGAGCTTGGCTTTTCGAACACTTCCTTAATCCGTACCCCAGCGACGCAGACAAGCTTCTGTTGGCTCGACAGACTGGTTTGTCCAGAAATCAGGTATCAAATTGGTTCATTAATGCAAGGGTTCGATTGTGGAAACCAATGGTAGAAGAAATGTACCAACTTGAAGACAAAGTCCAAACAGATAGTAATCATGATCATCAACAACAATCAGAAGAAAACGACGACGACAATAAGATCCAAAACACTGCCAACAACAACAACAACAATGCACAAAACCCAACACCCACCACCGCCACCGCCGCTCCACCGCCGTACTCGGCGGCGAACGACCACTACTCCGATCTGCATGATGTGTGGCGACATGGAACTGAAGAACATAATTATGGGACCATGTCTGAGGATGTTTCAGCGCCTGACATTAATATTAATAATAATAGCAATGGCCCAACACTTATCAGCTTTGGGACCACCGGCGATGTCTCACTCACTTTAGGGCTCCGCCACGCCGGAAACTCCTCCGCCTCCGCCGCCGCCGCCGATAACAACCCTTTCTCCATCAGAGACTTTGGCCATCATTCCTAG 2058 49.56 MGIAKGPLILCNKLITNCPNYYYSSMSQDYHPHQGFFTFSNALDKSNSSTLPHQIRRDKLFSDPLPPSMAAGIDDHHHHLHHVYAASPSGGTMLSDMFNFTPTASPTPAPLEFSDNFRALRPPSSAAAMQLFLMNPPPPPPPRSPSPPSASSTLHMLLPNPPSDPLQGFEGGGVGDQGNFGQFSVVESQGLSLSLHSSSLQHLKDVTATAKADEFRIRDGDQMMYNYNNNNNNNQVHGEGGSGSTSSILQYSFRNNSENSPHSFQANSQMNPNHQVHVGFGSSLGGVNHVLRTSKYVQAAQELLEEFCSVGRVQLKKNKFSLKQNPNPSTTTAATGSGGTGGASSSSKNQPPLSATDRIEHQRRKVKLLSMLDEVERRYNMYREQMQMVVNSFDMVMGYGAAAPYTTLTQKAMSRHFRCLKEAITEQLKQSYEALGEKGGSGGSGVTKGETPRLKLLEQSLRQQRAYHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEDKVQTDSNHDHQQQSEENDDDNKIQNTANNNNNNAQNPTPTTATAAPPPYSAANDHYSDLHDVWRHGTEEHNYGTMSEDVSAPDININNNSNGPTLISFGTTGDVSLTLGLRHAGNSSASAAAADNNPFSIRDFGHHS 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2626412 2633668 + Sed0011765.1 Sed10g0422 726926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0422 685 Gene3D - 481 543 - -
Sed10g0422 685 MobiDBLite consensus disorder prediction 550 603 - -
Sed10g0422 685 MobiDBLite consensus disorder prediction 571 588 - -
Sed10g0422 685 CDD homeodomain 478 539 IPR001356 GO:0003677(InterPro)
Sed10g0422 685 Pfam Homeobox KN domain 495 534 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed10g0422 685 SMART prehox3 284 426 IPR006563 -
Sed10g0422 685 FunFam BEL1-like homeodomain protein 4 481 543 - -
Sed10g0422 685 Coils Coil 365 392 - -
Sed10g0422 685 MobiDBLite consensus disorder prediction 550 570 - -
Sed10g0422 685 SMART HOX_1 478 542 IPR001356 GO:0003677(InterPro)
Sed10g0422 685 MobiDBLite consensus disorder prediction 321 356 - -
Sed10g0422 685 ProSiteProfiles 'Homeobox' domain profile. 475 538 IPR001356 GO:0003677(InterPro)
Sed10g0422 685 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 233 581 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed10g0422 685 SUPERFAMILY Homeodomain-like 479 546 IPR009057 -
Sed10g0422 685 MobiDBLite consensus disorder prediction 133 148 - -
Sed10g0422 685 MobiDBLite consensus disorder prediction 131 162 - -
Sed10g0422 685 Pfam Associated with HOX 290 425 IPR006563 -
Sed10g0422 685 MobiDBLite consensus disorder prediction 321 361 - -
Sed10g0422 685 MobiDBLite consensus disorder prediction 664 685 - -
Sed10g0422 685 MobiDBLite consensus disorder prediction 228 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3422 Sed-Chr5:43217900 Sed10g0422 Sed-Chr10:2626412 6.10E-97 dispersed
Sed10g0422 Sed-Chr10:2626412 Sed12g1342 Sed-Chr12:10289584 1.30E-66 dispersed
Sed01g0100 Sed-Chr1:923905 Sed10g0422 Sed-Chr10:2626412 1.10E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39697 PF07526 POX 5.50E-49 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0422 - - - 0.0