Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0427 ATGGAGAGCGAGTTTGGAGAATCGACAAGCTTCCCACATCAAAACCCCTCTTGGTCTAGTAACAATGATAGTGCTAACACCGATACTGGCGATTTCGAATGCAATATTTGCTTTGAGTTAGCTCAAGATCCAATTATCACTCTTTGTGGCCATCTCTTTTGCTGGCCCTGTTTGTATAGATGGCTGCATCATCACTCACAATGTCAAGACTGTCCTGTTTGTAAGGCTGTTGTTGAGGAGGAGAAGTTGGTTCCTCTTTATGGTAGGGGCAAGGTACCGTCTGACCCTAGATTGAATCGATATCCGGGCATCGATGTTCCGAGTCGTCCTGCTGGGCAAAGGCCTGAAACAGCACCTCCTCCCCCTGTGGCTAATCAATTTGCAAACTATGGTTTTGGATTCACTGGTGGCTTTATGCCAATGGCATCAGCAAGGATTGGCAACTTCACTTTTGGTACTGCTTTTGGTGGTCTGTTCCCATCTTTATTCAACTTCCAGGTTCATGGATTTTCTGATGCTACAGTTTATGGAACTACTTCTGGTTACCCTTATGCAGCATTCAACACGTTCCATGGCGGTCATGGCCACCATGCTCTGCAACCGGCTAGTCCAGGTCAGAATGCTGATAATTTACTGAAAAATATCCTTTTACTTGCTGGTTTCATTGTTATTCTTGCCTTTCTTTGGGGGTAA 693 45.17 MESEFGESTSFPHQNPSWSSNNDSANTDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQDCPVCKAVVEEEKLVPLYGRGKVPSDPRLNRYPGIDVPSRPAGQRPETAPPPPVANQFANYGFGFTGGFMPMASARIGNFTFGTAFGGLFPSLFNFQVHGFSDATVYGTTSGYPYAAFNTFHGGHGHHALQPASPGQNADNLLKNILLLAGFIVILAFLWG 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2673446 2674899 - Sed0012366.1 Sed10g0427 726931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0427 230 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Sed10g0427 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 192 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Sed10g0427 230 CDD RING-HC_AtRMA-like 32 76 - -
Sed10g0427 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 91 IPR013083 -
Sed10g0427 230 Pfam Ring finger domain 33 75 IPR001841 -
Sed10g0427 230 MobiDBLite consensus disorder prediction 98 120 - -
Sed10g0427 230 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Sed10g0427 230 SUPERFAMILY RING/U-box 29 87 - -
Sed10g0427 230 SMART ring_2 34 74 IPR001841 -
Sed10g0427 230 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0427 Sed-Chr10:2673446 Sed11g1002 Sed-Chr11:25145519 1.70E-60 dispersed
Sed10g0427 Sed-Chr10:2673446 Sed10g1313 Sed-Chr10:28769847 9.20E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0427 K10666 - csv:101205026 408.683