Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g0443 | ATGGCTTCCATGGACTTATTTTCAGCCATTCTTTTTACCATAATACCCTTTCTCTTCCTCATAATTCTCTCTCAAATTTCAAACCTGAATTTCAATGGCTTAATTCCATGGAATTGGCCCATTTTAGGAATGACTCCAACCGTTATTAGCCATCTCCATCGAGCTCACGAACGCGTAACCGAAGTCCTTAACGAAGCTGGCTCAACTTTCATCTTCAAAGGCATTTGGTTTTCAGGTCTAGATTTCTTCTTTACAGTGGACCCTTCAAATATACACCATATTTTAAGCTCCAATTTTGAAAAATACCCAAAAGGTCCCGATTTCAAGTACATTTTTGACGTTTTGGGAGATGGGATTTTCAATTCGGACTCCGTTTTATGGCAAAGTCAACGAAAAACGGCTCATGCTTTGATTCGTCATCAAAATTTTCTTCAATTTTTGGAGAAAATTACGATGAAAAAAGTCAAAGAAGGGTTGATTCCAATACTTGAAAGTGTTAGTGAAAAAGGGTTGGTGTTGGATTTGCAAGATTTGTTTCAAAGATTCTCTTTTGATTCAACTTGTATGTTGGTCACTGGCTTTGACCTTTGTAGTTTGTCTCTTAATTTCCCTGAAATTCCATTTTCTAAGGCTATGGATGACGTGGAGGAAGTGATTTTTCTTCGACATTTTTTCCCTAAGAAATTATGGGAATTTCAATTCAAGTTCCAAATTGGACAAGCCAAGAGGTTAAAACAAGCTTGGGAAATCATAGATGAAACAATTGCAAAATTGTTAGCTTCAAAAAGAGAAAGCTTGAAGATGATGAAGAAAGAACAAGAACAAGAACAAGGAGTTGATTTGATTACATCGTACATTAAAAATTACAAAGATGATGATGACGACGACAAGTTCTTGAGAGACACTATTTTGAATTTCATGATTGCTGGTCGGGACACTCTAAGCTCAGCATTATCTTGGTTTTTCTTTTGTCTCTCAAACAATCCAATTGTGGGAGCAAAGATAAGAGAAGAGCTTGAATCAACAATCCCAAAAACCGAAAATCGAAATCGATTTCGGGTATTTTCGATTCAAGAAGTGGAAAAATTAGGGTATTTTCATGGAGCTTTATGTGAAGCACTAAGGCTTTATCCACCAGTTCCACTTCAACATAAAGTTTCCACACAACATGATATTCTCCCAACTGGTCATCATATAAATCCCAAAACAAAGATTTTGTTTTCATTATATGCATTGGGAAGAATGAGCAATGTATGGGGAAAAGATTGCATGGAATTCAGGCCAGAAAGATGGATTTCAGAAAAGGGTACTATAAAACATGTTCCATCTTACAAATTCTTGGCCTTTAATGCTGGGCCAAGGACTTGTTTGGGAAAACAAGTGGCTTTTACTGAGATGAAAATAGTGGCAGCTGCCATTGTTCATAACTATAATGTTATTAAAGAAATTGGGCATGAGGTTGTGCCAAATGCCTCCATTATTCTTCACATGAAGCATGGATTCAAGGTCAAGGTTACAAAGAGATGGAGTTGA | 1533 | 36.59 | MASMDLFSAILFTIIPFLFLIILSQISNLNFNGLIPWNWPILGMTPTVISHLHRAHERVTEVLNEAGSTFIFKGIWFSGLDFFFTVDPSNIHHILSSNFEKYPKGPDFKYIFDVLGDGIFNSDSVLWQSQRKTAHALIRHQNFLQFLEKITMKKVKEGLIPILESVSEKGLVLDLQDLFQRFSFDSTCMLVTGFDLCSLSLNFPEIPFSKAMDDVEEVIFLRHFFPKKLWEFQFKFQIGQAKRLKQAWEIIDETIAKLLASKRESLKMMKKEQEQEQGVDLITSYIKNYKDDDDDDKFLRDTILNFMIAGRDTLSSALSWFFFCLSNNPIVGAKIREELESTIPKTENRNRFRVFSIQEVEKLGYFHGALCEALRLYPPVPLQHKVSTQHDILPTGHHINPKTKILFSLYALGRMSNVWGKDCMEFRPERWISEKGTIKHVPSYKFLAFNAGPRTCLGKQVAFTEMKIVAAAIVHNYNVIKEIGHEVVPNASIILHMKHGFKVKVTKRWS | 510 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2777544 | 2779144 | - | Sed0024705.1 | Sed10g0443 | 726947 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g0443 | 510 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 449 | 458 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed10g0443 | 510 | PRINTS | E-class P450 group I signature | 318 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | PRINTS | E-class P450 group I signature | 446 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | PRINTS | E-class P450 group I signature | 456 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | PRINTS | E-class P450 group I signature | 298 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | SUPERFAMILY | Cytochrome P450 | 36 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | PRINTS | P450 superfamily signature | 309 | 326 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | PRINTS | P450 superfamily signature | 447 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | PRINTS | P450 superfamily signature | 368 | 379 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | PRINTS | P450 superfamily signature | 456 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | Gene3D | Cytochrome P450 | 27 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | Pfam | Cytochrome P450 | 38 | 481 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0443 | 510 | PANTHER | CYTOCHROME P450 | 22 | 501 | - | - | |
| Sed10g0443 | 510 | Coils | Coil | 256 | 276 | - | - | |
| Sed10g0443 | 510 | CDD | CYP86A | 70 | 501 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g1151 | Sed-Chr5:12190102 | Sed10g0443 | Sed-Chr10:2777544 | 9.70E-229 | dispersed | |
| Sed07g0603 | Sed-Chr7:4565135 | Sed10g0443 | Sed-Chr10:2777544 | 2.00E-99 | dispersed | |
| Sed09g0050 | Sed-Chr9:409158 | Sed10g0443 | Sed-Chr10:2777544 | 8.00E-88 | dispersed | |
| Sed10g0443 | Sed-Chr10:2777544 | Sed12g2502 | Sed-Chr12:34536214 | 1.90E-62 | dispersed | |
| Sed10g0443 | Sed-Chr10:2777544 | Sed10g0444 | Sed-Chr10:2798702 | 1.80E-166 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g0443 | - | - | - | 0.0 |