Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0462 ATGGTGCCCTTTTCCCCATCTTCTCCAAAACCCCTTCTCTGCATCCTCTTCTCTTTCACTCTTCTCTCCCTTTCTGTTTCCTCTCACACAGACGCCCAGCAACTGATTTCCTTCAAATCTTCACTTCCAAATCCGACCCTCCTTCCAAACTGGTTTTCTAATGAAAACCCATGTTCGTTTTCTGGTATTACTTGCAAGGAAAACAGAGTTTCCGCCATAGATTTGAGCTTTGTCTCTTTAAGCTCTAATTTCAGCCGTGTTTTTTCTTTGCTTGCTGGTTTGGACCGGTTGGAATCGATTTCGCTGAAATCTACTAACCTCACTGGCTCCATTTCTGTGCCTGTTGACTTCAAGTGTAGCTCTATGCTTTCTTCTCTAGATCTGTCCTTCAATGCTCTGTTTGGTTCTGTTTCTGATGTTTCTAATTTGGGGATTTGCTCGAATCTGAACTCGCTGAATGTTTCTTTTAATTTCTTTGATTTCCCCCCAAATGACTCTGCCCATCGGTTGAAGCTTGATTTGCAGATTCTTGATCTTTCTTCGAACAGGATTGTTGGGTCGAGATTGGTTCCGTGGATTTTCGGTTCTGGGTGTGGGGATTTGAAGTTCTTGGCACTGAGGGGCAACAAAATCAGCGGCGAGATGGATTTATCGTCGTGTAATAAACTCGAGCATTTGGATATTTCTGGCAACAATTTCTCTGTGGGTATTCCGGCGTTTGGCGATTGCTCTGTTTTGAAACATCTTGACATCTCCGGCAATAAGTTCACCGGCGTCGTCGGAAATGCTCTGTTTTCTTGTCTGCAGCTCAGCTTTGTAAATCTCTCGAGCAACCATTTTCAAGGGCCAATCCCGTCATTTTCGTCGTCGAATTTGCTGTTTCTTTCCCTTGCTAACAACGATTTTCAGGGGGAGATTCCTGTTCGTGTTGCGGATTTGTGTTCTGTTCTTGTTGAATTGGATTTCTCATTGAATAGCTTGATTGGGGCTGTGCCTTCTTCATTGGGGTCGTGTTCTTCGTTGGAAATTTTCGACATTTCGAATAATAACCTCTCTGGTGAGCTTCCGATTTCTGTTTTTGCTAAAATGATTAGTCTCAAGCGACTCTCTGTTTCGAATAATCAGTTTTTCGGGGATTTGCCGGATTCATTGTCTCTACTCACTACTTTGAACTCTTTGGATCTGAGTTCGAATAACTTTTCGGGGTCAATTCCGGCAGGGTTATGTAAAGACCCTAAAATCAGCTTGAAAGAATTGTTTCTGCAGAACAATTGGTTGACAGGACACATCCCTGCTTCAATTAGTAACTGTTCTCAGCTTGTTTCTCTTGATTTGAGCTTTAACTTCTTAAGTGGAACAATCCCTTCAAGTTTAGGATCGCTCTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTTGAAGGAGAGATTCCATCAGAATTCAAGAACTTTCAGGGGCTTGAGAATCTGATCCTGGATTTCAACGAGCTAACCGGGTCGATTCCTTCCGGGTTAAGCAACTGCACCAACTTGAACTGGATTTCATTGTCGAACAACCGGTTGAGCGGGGAGATTCCCGCCTGGATCGGGCAGTTGCCGAGCCTTGCCATTCTTAAGCTTAGCAACAACTCATTCAGCGGTAGGATTCCTGTCGAGCTGGGCGATTGTCGGAGCTTGATCTGGCTTGATCTCAATACCAATCTCTTGAATGGAACAATCCCTTCGAAGCTGTTTCGACAATCGGGTAATATCGCGGTGAACTTCATTACTGGGAAGTCGTATGCTTACATTAAGAATGATGGTAGCAAGCAATGCCATGGAGCTGGAAACTTGCTTGAGTTTGCTGGGATAAGGCAAGAACAAGTTGACAGGATTTCAAGTAAGAGTCCCTGCAATTTCACCAGGGTGTATAAAGGAATGACTCAGCCGACGTTTAACCATAACGGGTCGATGATCTTTCTCGATCTTTCGCATAATATGTTGACTGGTAGTATTCCCAAGGAGATTGGTTCTGCAAATTATCTCTACATATTGGATTTAGGACATAACAGACTCTCGGGAGCCATTCCGCACGAGCTCGGCGACTTGACGAAACTTAACATTCTTGTTCTCTCAAGCAATGAGCTTGAAGGATCAATCCCATTGTCTTTAACTGGGCTGTCCTCCCTCATGGAGATTGATCTGTCAAGCAATCATCTGAATGGTTCAATACCCGAATCAGCTCAGTTCGAAACGTTCCCGGCATCTGGTTTTGCGAATAACTCTGGTCTCTGTGGGTATCCTCTCCCTCAATGTGTGGATGATTCAGTAGTGAGTGCTAATTCTCAGCATCAAAGATCTCATAAGAAACCGGCGTCGGTTGCAGGGAGCATCGCAATGGGGCTACTCTTTGCACTGTTCTGTATATTCGGTCTGATCATAGTTGTTATTGAGGTCAGAAAGAGAAGGAAAAGGAAGGATTCTGCCCTTGATTCATATATTGAGAGCCATTCCCATTCAGGCGGGTCGACCGCCGTAAACTGGAAGAAGACATGTGCTCGCGAAGCATTGAGCATCAATCTTGCTACATTCGAGAAGCCACTTCAGAAGCTTACTTTTGCAGATCTTCTCGAGGCGACGAACGGCTTCCACAATGACAGCATGATTGGTTCGGGGGGTTTCGGTGACGTATACAAGGCTCAATTGAAGGATGGAAGCATTGTAGCAATCAAGAAGCTGATTCATGTAAGTGGGCAGGGTGACAGGGAGTTCACTGCAGAAATGGAAACAATTGGCAAAATCAAACACAGAAACCTGGTACCTCTTCTCGGCTACTGCAAAGTCGGAGAAGAACGCCTCCTCGTGTACCAGTACATGAAATACGGAAGCTTGGAAGACGTTTTACACGACACGAAGAAGGGCGCGATCAAACTTAATTGGGCTGCAAGAAGGAAGATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCATAGGGATATGAAATCAAGCAATGTCTTATTGGATGAGAATTTGGAAGCCAGAGTCTCAGATTTTGGAATGGCAAGATTGATGAGTGCCATGGACACCCATTTGAGTGTCAGCACCTTAGCCGGAACGCCCGGCTACGTCCCGCCCGAATATTACCAAAGCTTCCGGTGTTCGACAAAAGGCGATGTTTACAGTTACGGTGTTGTTTTGCTCGAACTCTTAACAGGAAAACGACCCACAGATTCTGCTGATTTTGGGGATAACAATCTTGTCGGATGGGTTAAACAACATGCCAAGTTAGACATTACCAACGTATTTGATCCCGAGCTCGTGAAGGAGGATCCAAGCCTTAAGATAGAGCTTTTAGAGCATTTGAAGGTAGCGGTTGCTTGCTTAGACGATAGGACATGGCGGCGTCCAACGATGATCCAAGTGATGACGATGTTCAAGGAAATTCAAGCTGGGTCAGGTATGGATTCGATATCTTCAACCGGTACCGACAGCGAAGTATTCAGCATCGACATGGTAGACATGAGCTTAAAGGAAGTACCAGAAGGAAAGTAA 3564 44.84 MVPFSPSSPKPLLCILFSFTLLSLSVSSHTDAQQLISFKSSLPNPTLLPNWFSNENPCSFSGITCKENRVSAIDLSFVSLSSNFSRVFSLLAGLDRLESISLKSTNLTGSISVPVDFKCSSMLSSLDLSFNALFGSVSDVSNLGICSNLNSLNVSFNFFDFPPNDSAHRLKLDLQILDLSSNRIVGSRLVPWIFGSGCGDLKFLALRGNKISGEMDLSSCNKLEHLDISGNNFSVGIPAFGDCSVLKHLDISGNKFTGVVGNALFSCLQLSFVNLSSNHFQGPIPSFSSSNLLFLSLANNDFQGEIPVRVADLCSVLVELDFSLNSLIGAVPSSLGSCSSLEIFDISNNNLSGELPISVFAKMISLKRLSVSNNQFFGDLPDSLSLLTTLNSLDLSSNNFSGSIPAGLCKDPKISLKELFLQNNWLTGHIPASISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSEFKNFQGLENLILDFNELTGSIPSGLSNCTNLNWISLSNNRLSGEIPAWIGQLPSLAILKLSNNSFSGRIPVELGDCRSLIWLDLNTNLLNGTIPSKLFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVDRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLTGSIPKEIGSANYLYILDLGHNRLSGAIPHELGDLTKLNILVLSSNELEGSIPLSLTGLSSLMEIDLSSNHLNGSIPESAQFETFPASGFANNSGLCGYPLPQCVDDSVVSANSQHQRSHKKPASVAGSIAMGLLFALFCIFGLIIVVIEVRKRRKRKDSALDSYIESHSHSGGSTAVNWKKTCAREALSINLATFEKPLQKLTFADLLEATNGFHNDSMIGSGGFGDVYKAQLKDGSIVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYQYMKYGSLEDVLHDTKKGAIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLDITNVFDPELVKEDPSLKIELLEHLKVAVACLDDRTWRRPTMIQVMTMFKEIQAGSGMDSISSTGTDSEVFSIDMVDMSLKEVPEGK 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2930498 2934584 - Sed0023250.1 Sed10g0462 726966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0462 1187 SUPERFAMILY RNI-like 53 307 - -
Sed10g0462 1187 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 387 1151 IPR051716 GO:0004674(PANTHER)
Sed10g0462 1187 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 414 585 - -
Sed10g0462 1187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 999 1011 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0462 1187 FunFam Serine/threonine-protein kinase BRI1-like 1 590 647 - -
Sed10g0462 1187 FunFam serine/threonine-protein kinase BRI1-like 2 838 952 - -
Sed10g0462 1187 Gene3D Transferase(Phosphotransferase) domain 1 953 1154 - -
Sed10g0462 1187 SMART serkin_6 877 1149 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0462 1187 SUPERFAMILY L domain-like 644 762 - -
Sed10g0462 1187 CDD STKc_IRAK 883 1152 - -
Sed10g0462 1187 Pfam Leucine rich repeat 487 545 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 Pfam Leucine rich repeat 676 734 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 SMART LRR_typ_2 697 720 IPR003591 -
Sed10g0462 1187 SMART LRR_typ_2 558 581 IPR003591 -
Sed10g0462 1187 SMART LRR_typ_2 174 196 IPR003591 -
Sed10g0462 1187 SMART LRR_typ_2 485 509 IPR003591 -
Sed10g0462 1187 SMART LRR_typ_2 721 744 IPR003591 -
Sed10g0462 1187 SMART LRR_typ_2 387 411 IPR003591 -
Sed10g0462 1187 SMART LRR_typ_2 533 557 IPR003591 -
Sed10g0462 1187 SUPERFAMILY Protein kinase-like (PK-like) 863 1154 IPR011009 -
Sed10g0462 1187 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Sed10g0462 1187 ProSitePatterns Protein kinases ATP-binding region signature. 883 906 IPR017441 GO:0005524(InterPro)
Sed10g0462 1187 Pfam Protein kinase domain 878 1146 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0462 1187 Gene3D Phosphorylase Kinase; domain 1 837 952 - -
Sed10g0462 1187 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 173 413 - -
Sed10g0462 1187 Gene3D - 588 648 - -
Sed10g0462 1187 FunFam Brassinosteroid LRR receptor kinase 953 1154 - -
Sed10g0462 1187 SUPERFAMILY RNI-like 262 576 - -
Sed10g0462 1187 Pfam Leucine Rich Repeat 246 266 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 Pfam Leucine Rich Repeat 440 461 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 Pfam Leucine Rich Repeat 222 241 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 Pfam Leucine Rich Repeat 415 437 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 Pfam Leucine Rich Repeat 340 358 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 Pfam Leucine Rich Repeat 365 385 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 Pfam Leucine Rich Repeat 390 409 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 Pfam Leucine Rich Repeat 654 672 IPR001611 GO:0005515(InterPro)
Sed10g0462 1187 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 644 766 - -
Sed10g0462 1187 Gene3D Ribonuclease Inhibitor 35 766 IPR032675 -
Sed10g0462 1187 Pfam Brassinosteroid receptor island domain 583 647 IPR045381 -
Sed10g0462 1187 ProSiteProfiles Protein kinase domain profile. 877 1152 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1072 Sed-Chr3:6517773 Sed10g0462 Sed-Chr10:2930498 3.40E-141 dispersed
Sed07g1049 Sed-Chr7:7561561 Sed10g0462 Sed-Chr10:2930498 9.10E-90 dispersed
Sed10g0462 Sed-Chr10:2930498 Sed14g0768 Sed-Chr14:9313712 0.00E+00 dispersed
Sed10g0462 Sed-Chr10:2930498 Sed04g2038 Sed-Chr4:34766002 2.50E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79820 PF00069 Pkinase 5.50E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0462 K13415 - csv:101209118 1988.0