Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0473 ATGGATACGGCCGGTAGACTCATTGCTGGGTCTCATAATAGAAACGAGTTTGTTCTGATTAATGCAGATGAGACTGCTCGGATCAAGTCTGTGAAGGAATTGAGTGGACAAACATGTCAGATTTGTGGGGATGATGTTGAGTTAACTGCTGAAGGAGAGCTCTTTGTTGCTTGTAATGAATGTGCTTTCCCAGTTTGTAGACCTTGTTATGAGTATGAAAGAAGAGAGGGAAATCAAGCTTGTCCACAGTGTAAAACCAGATACAAGCGCATTAAAGGTAGTCCTAGAGTTGAAGGTGATGAGGATGAAGATGATATTGATGATTTGGATAATGAGTTTGACTATGGAAGCTTTGATGCTTTGGGACCGAATGGTGCAGAGGTGTCATATGCTTCACATCCTTATGCTGGCCGTGGTTCCCATCGGTCGGACCATGAACCGTCTCCCTTTGGTTCTGAGATTCCTCTCTTAACATATGGCGAGGAGGATTATGAGATTTCTTCCAATCAACATGCTCTTGTACCCCACTCTATGGGTCATGGAAACAGAGTTCACCCAATGCCTAACCCTGATCCTTCAATACCTTCTCAACCTAGACCAATGGTTCCCCAAAAAGATATTGCGGTGTATGGTTATGGGAGTGTTGCATGGAAGGACAGAATGGAGGCATGGAAGAAGAAGCAAAATGATAAGCTTCAAGTGGTGAAGCACGAAGGGGTTGACGGTGATGGAAATGATATTGATGATCCGGACTTGCCCATGATGGATGAAGCTAGGCAACCGCTATCAAGGAAAATGCCCATCTCTTCAAGCAGGATCAATCCATACAGATTAATCATCTTGCTTCGTCTTGTTATTCTCGGTCTGTTTTTCCACTATAGAATTCTTCATCCAGTTAAAGACGCCTATGGCCTGTGGTTGACTTCGGTAATTTGTGAAATATGGTTTGCCGCTTCGTGGGTTTTGGATCAGTTTCCGAAATGGTATCCAATTGAAAGGGAAACTTATCTTGATAGGCTGTCACTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCTAGTGTGGATGTATTTGTCAGTACTGTCGATCCAATGAAAGAACCTCCATTAATCACGGCCAACACAGTACTTTCCATCCTTGCAGTTGACTATCCAGTCGATAAAGTTGCGTGCTATGTCTCAGATGATGGTGCGGCGATGCTAACATTTGAAGCACTCTCCGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTCAATATTGAACCTCGTGCCCCAGAATTTTACTTCTCTCAGAAGATGGATTATTTGAAGAACAAGGTTCATCCAGCCTTCGTCAGGGAAAGGCGAGCAATGAAGAGAGAATACGAAGAGTTTAAGGTTAGGATAAATGCTTTGGTCTCCATGGCTCAAAAAGTCCCCGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCCGGAAACAATGTTCGAGACCATCCTGGCATGATTCAGGTCTTCCTTGGCCAAAGTGGAGTTTGTGATGTCGAAGGAAATGAGCTACCACGCCTGGTTTATGTTTCTCGTGAAAAGCGGCCAGGGTTTGAACATCACAAGAAGGCTGGGGCCATGAATTCACTGGTTCGAGTCTCGGCAGTTCTGTCAAATGCTCCCTATCTTCTTAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCAGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGTATTGATCGACATGATCGATATTCAAACCGGAATGTTGTGTTCTTTGATATTAACATGAAAGGACTAGATGGACTTCAAGGACCGATATATGTTGGAACGGGATGCATTTTCCGGAGGGTTGCCCTCTATGGACTTGATGCTCCTGCCAAGAAGAAACCTCCAAGCAAAACATGCAACTGCTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCGAGAAGGAACAAGAAAGGAAAGGCAAAAGGTGAGAAAAAGAAGCCAAAACATAGAGAATCCTCAAAGCAGATCCATGCACTTGAGAATATCGAGGAGGGAATCGAAGATCTAGGTGTGGAGAAAATGAGTGAGTCTCAAATAAAATTGGCAAAAAAATTCGGGCAATCTCCTGTGTTTGTCGCCTCGACCCTGTTGGAAAATGGAGGAGTTCCTCATGATGTGAGTGCTGCATCACTCCTTAGAGAAGCAGTTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGAAAAGAGGTTGGGTGGATTTATGGTTCCGTCACTGAAGATATTTTGACTGGATTCAAAATGCACTGTCATGGATGGCGATCCGTGTACTGTATTCCCAAGAGACCCGCATTTAAAGGGTCGGCTCCTATCAATCTTTCGGATCGTCTACACCAAGTTTTGCGGTGGGCTCTAGGATCCGTCGAGATACTCTTGAGCAGACACTGTCCAATATGGTATGGCTATGGAGGTGGGATGAACTGGTTGGAACGGTTTTCGTACATAAACTCCGTGGTCTATCCGTTGACCTCGATTCCATTGCTTGTTTACTGTAGTTTGCCAGCTATTTGTCTTCTCACAGGAAAATTTATTGTTCCTGAGATTAGCAATTATGCCAGTCTTATTTTCATGGCACTCTTTATGTCAATTGCTGCAACTGGCATACTCGAGATGCAATGGGGAGGTGTTGGGATCGACGACTGGTGGAGAAACGAGCAGTTCTGGGTTATAGGAGGCGTTTCGTCGCATCTTTTTGCTCTCTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTCAGCACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAATTTTCAGAGCTCTATATCTTCAAGTGGACATCATTGTTAATACCTCCCACGACTTTGTTGATCATAAACATCGTCGGTGTGATTGTCGGGATCTCCGATGCCATCAACAATGGATATGAGTCCTGGGGTCCTCTTTTCGGAAGACTATTTTTCGCTCTTTGGGTGATCATCCACCTGTACCCCTTCTTGAAGGGATTGTTAGGGAAACAAGATCGGATACCGACGATCATTGTCGTTTGGTCCATTCTTTTAGCCTCGATCTTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAGAGATGGTCCTGTTTTAGAAGTTTGCGGGTTGAATTGCGATTAG 3249 43.92 MDTAGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICGDDVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGSFDALGPNGAEVSYASHPYAGRGSHRSDHEPSPFGSEIPLLTYGEEDYEISSNQHALVPHSMGHGNRVHPMPNPDPSIPSQPRPMVPQKDIAVYGYGSVAWKDRMEAWKKKQNDKLQVVKHEGVDGDGNDIDDPDLPMMDEARQPLSRKMPISSSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAASWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVRINALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCIFRRVALYGLDAPAKKKPPSKTCNCLPKWCCLCCGSRRNKKGKAKGEKKKPKHRESSKQIHALENIEEGIEDLGVEKMSESQIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAVQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGGGMNWLERFSYINSVVYPLTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFMSIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYESWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRIPTIIVVWSILLASILTLLWVRINPFVSRDGPVLEVCGLNCD 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3016469 3023460 - Sed0020757.1 Sed10g0473 726977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0473 1082 MobiDBLite consensus disorder prediction 675 694 - -
Sed10g0473 1082 Pfam Cellulose synthase 356 1070 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Sed10g0473 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 262 1051 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Sed10g0473 1082 FunFam Cellulose synthase 21 112 - -
Sed10g0473 1082 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Sed10g0473 1082 MobiDBLite consensus disorder prediction 675 692 - -
Sed10g0473 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Sed10g0473 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 512 648 IPR029044 -
Sed10g0473 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 369 904 IPR029044 -
Sed10g0473 1082 CDD mRING-HC-C4C4_CesA 37 87 - -
Sed10g0473 1082 FunFam Cellulose synthase 473 647 - -
Sed10g0473 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Sed10g0473 1082 SUPERFAMILY RING/U-box 25 111 - -
Sed10g0473 1082 MobiDBLite consensus disorder prediction 129 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0473 Sed-Chr10:3016469 Sed10g1676 Sed-Chr10:33333406 0.00E+00 dispersed
Sed05g1686 Sed-Chr5:30662404 Sed10g0473 Sed-Chr10:3016469 0.00E+00 transposed
Sed10g0473 Sed-Chr10:3016469 Sed14g0208 Sed-Chr14:2351148 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0473 K10999 - csv:101211094 2039.62