Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0492 ATGGTGAGAGACGACCTATGTATTACGATTCCGAGCGATTTCAGGTGTCCGATTTCGCTGGACGTGATGAAATCGCCGGTAAGTTTATGCACCGGCGTCACTTACGACCGTTCCAGCATTCAGAAATGGCTCGACAATGGAAACAATACTTGTCCGGCCACCATGCAGGTTCTTCAGACCAAGGAGTTCGTTCCTAACCACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCAACCGCCACCGGCTCCACTCGCCGGTTCTCTCCTCCGATCAAATCCTCCGTCTCATCGATCAACCTCGCGCCGATTCGCTTCCGCGGCTCGTCAAATTCGCCGCCGATTCGGCGGCGAATCGGCGGCTGCTTTGCGAAATCGACGGTTTCGTACCTGTTCTTATCGATCTTCTCGATAATGTTCACGGCGGCGATGTGGTTGAGCAGACGGCGAGATTGTTGCATTTGATCTGGAGTGAAGTGAAAGATAAGGAGCGATTTGTGAAATCGATATTGAGGATCGATCGTAATTGCGTTTCGTCTCTGCTTTTGATTCTGAGAAAATCAACAATCGAAATGAAAATCTGTTCCGCTGATCTGTTAGGGCAAATCGCAATCGACGCGGAATCGAAGATCCAAATCGCGGAAACGGAAGGATTAATGCAAGAATTAATGAAATCACTAAACACCGAGACCGATCCAGCCCTAACCGAATCGATTCTCTCGTGCTTAATCTCAATCTCATCGCCGAAACGGATCCGAATCCGATTAGTAAAACTCGGAGCGATAAGATCGGCGACGAGGCATTTAGCGGAGGCGAGCGTTTCGGCGACGGAGAAGATTCTGAAGGTAGTGGAGACGGCGTCGACGGTGAGGGAAGGTCGGGCGGAGATCGGGGAGGATCCGGCGGTGGTGGCGGCGATCGTGGGGAAGGTGCTGAAGGTGTCGAGCGCGGCGACGGAGCACGCAGTGACGACGCTGTGGAGCGTTTGTTACCTGTTCCGAGACGAGAAGGCGGCGGAGGCGCTGATGAAGGCGAACGGACTGACGAAGATTCTGCTGCTGATGCAGAGCAATTGCTCGCCGGCGGTGAGGCAGATGGCGAGGGATTTGTTGAAGATTTTTCGGATCAATTCGAAATCGTGTTTGTCCAGTTACGATACCAAGACTACGCATATTATGCCTTGTTGA 1188 52.19 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSNRHRLHSPVLSSDQILRLIDQPRADSLPRLVKFAADSAANRRLLCEIDGFVPVLIDLLDNVHGGDVVEQTARLLHLIWSEVKDKERFVKSILRIDRNCVSSLLLILRKSTIEMKICSADLLGQIAIDAESKIQIAETEGLMQELMKSLNTETDPALTESILSCLISISSPKRIRIRLVKLGAIRSATRHLAEASVSATEKILKVVETASTVREGRAEIGEDPAVVAAIVGKVLKVSSAATEHAVTTLWSVCYLFRDEKAAEALMKANGLTKILLLMQSNCSPAVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3191672 3193228 + Sed0008178.1 Sed10g0492 726996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0492 395 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed10g0492 395 SUPERFAMILY RING/U-box 6 83 - -
Sed10g0492 395 SUPERFAMILY ARM repeat 109 377 IPR016024 -
Sed10g0492 395 CDD RING-Ubox_PUB 11 63 IPR045210 -
Sed10g0492 395 Gene3D - 98 388 IPR011989 -
Sed10g0492 395 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed10g0492 395 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Sed10g0492 395 PANTHER WDSAM1 PROTEIN 7 394 IPR045185 GO:0061630(InterPro)
Sed10g0492 395 Pfam U-box domain 10 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed10g0492 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 88 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0492 Sed-Chr10:3191672 Sed13g0489 Sed-Chr13:3337258 2.00E-32 dispersed
Sed10g0492 Sed-Chr10:3191672 Sed04g2990 Sed-Chr4:41224796 1.30E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0492 - - - 0.0