Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0499 ATGCATAACCATGGGCTAACCCTTATGTCCCTAAGGGGTCGCGCGGTGGTCGAAAGTTTGGACTTTGAAGGTGTGCTCCTCTTAAGGTCTCAGCTTTGGTTGCTAAATTCAGCGGAAGGACAGAAGAAAGTCCCTGGGGCTACCTATCAGAGCAGCCTTTCTTATCATGGTTCTGCTGTTAATAGCCTTCGCTTCTCACCTTCTGGGGAACAGCTTGCCTCTGGTGCTGATGGAGGTGAGCTGATCATATGGAAATTGCATCATTTGGAAAATGGCCAGACTTGGAAGGTCCTGAAGACGTTGTCATTTCACCGCAAGGATGTGCTTGACTTGCAGTGGTCTCATGATGGTACATATTTGATATCTGGATCCGTCGATAATTCTTGCATCATATGGGATGTAAGCAAAGGATCTGTCCATCAGATTTTCGATGCACATTTGCACTATGTTCAAGGTGTGGCGTTGGACCCACTGGGAAAGTACGCAGCTTCTTTGAGTTCCGACAGAAGTTGCAGAATCTATGCCTATAAACCCCCAACCAAAGCAAAAGTCAGTGAGAAAATGAATTATGTTTGTCAGCATGTCATCACTAAGGCAGAACATGTTTCAGCTGATGATTCTAAGTCCGCTCGAAACCATCTCTTTCATGATGAGACGTTACCATCTTTCTTCCGAAGGTTGGCCTGGTCACCTGATGGGTCTTTTCTACTTGTGCCTGCAGGTATTTGTAAAATATCACCAGCATCTGAACCAGTTAATACAGCCTATATCTTTTCTAGAAAGGATCTTTCGAGGCCTGCTATTCAGCTACCTGGTGCCAGTAAGCCAATTGTAGCAGTTAGCTTTTGTCCAAAACTATTCAATCTTAGAGGATTGAATTCAGCTGGGTTCTTTAAGATTCCACATCGGGTTATATTTGCAGTAGTGACTTTAAATTCTTTGTACATATATGATACTGAAAGTGTTCTACCACTAGTTATAATGGCTGGTCTTCACTACGCCGCCATAACAGATGTCGCGTGGTCGGCAGATGCTCATTATTTAGCACTATCTTCTCAAGATGGATACTGCACTTTAGTGGAATTTGAAAATGATGAACTGGGATTACCACTCGCTCAATCAGACGAAAGAACATGTACGACAGCCCATCCAAATACAAGTGCAACCGATACGGTGACGGTAAACAATGATCAAGGTAAGAAAACAGAAGCAGAAGTGAAACATGAAGAAAACAAAAGCTTTGAAAAGTCAGATAACATGGTGATTGAAAAAGATTCCACTGGAGAAAATCTTGCTGTACCTGACAGCAAAGAAAAAGAACAAGTAATGGAAAAGGAGTCAAGTAAACAGGTATCTGTAAGCTCTTCAAGCAACAATGCTACCAGCAAGCCAGCCAAAAGGCGCATTACACCCATGGCTATTGATCCATGA 1431 42.98 MHNHGLTLMSLRGRAVVESLDFEGVLLLRSQLWLLNSAEGQKKVPGATYQSSLSYHGSAVNSLRFSPSGEQLASGADGGELIIWKLHHLENGQTWKVLKTLSFHRKDVLDLQWSHDGTYLISGSVDNSCIIWDVSKGSVHQIFDAHLHYVQGVALDPLGKYAASLSSDRSCRIYAYKPPTKAKVSEKMNYVCQHVITKAEHVSADDSKSARNHLFHDETLPSFFRRLAWSPDGSFLLVPAGICKISPASEPVNTAYIFSRKDLSRPAIQLPGASKPIVAVSFCPKLFNLRGLNSAGFFKIPHRVIFAVVTLNSLYIYDTESVLPLVIMAGLHYAAITDVAWSADAHYLALSSQDGYCTLVEFENDELGLPLAQSDERTCTTAHPNTSATDTVTVNNDQGKKTEAEVKHEENKSFEKSDNMVIEKDSTGENLAVPDSKEKEQVMEKESSKQVSVSSSSNNATSKPAKRRITPMAIDP 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3271368 3277026 + Sed0020894.2 Sed10g0499 727003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0499 476 SMART WD40_4 94 133 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 SMART WD40_4 321 361 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 SMART WD40_4 136 175 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 SMART WD40_4 46 85 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 SUPERFAMILY WD40 repeat-like 41 359 IPR036322 GO:0005515(InterPro)
Sed10g0499 476 MobiDBLite consensus disorder prediction 400 423 - -
Sed10g0499 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 86 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 138 - -
Sed10g0499 476 Pfam WD domain, G-beta repeat 332 357 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 Pfam WD domain, G-beta repeat 95 133 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 Pfam WD domain, G-beta repeat 140 174 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 Pfam WD domain, G-beta repeat 50 84 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 MobiDBLite consensus disorder prediction 379 399 - -
Sed10g0499 476 ProSitePatterns Trp-Asp (WD) repeats signature. 120 134 IPR019775 -
Sed10g0499 476 MobiDBLite consensus disorder prediction 447 465 - -
Sed10g0499 476 Gene3D - 223 420 IPR015943 GO:0005515(InterPro)
Sed10g0499 476 MobiDBLite consensus disorder prediction 379 476 - -
Sed10g0499 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 142 IPR001680 GO:0005515(InterPro)
Sed10g0499 476 Gene3D - 28 222 IPR015943 GO:0005515(InterPro)
Sed10g0499 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 86 - -
Sed10g0499 476 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 32 466 IPR045145 GO:0005634(PANTHER)|GO:0006334(PANTHER)|GO:0006335(InterPro)|GO:0033186(PANTHER)
Sed10g0499 476 MobiDBLite consensus disorder prediction 430 446 - -
Sed10g0499 476 FunFam Chromatin assembly factor 1 subunit FAS2 27 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0499 K10751 - - csv:101222502 728.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0498 Sed-Chr10:3271368 Sed10g0499 Sed-Chr10:3271368 3.70E-230 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1283 . . . . . . . . . . Cma03g01090 . Car03g00981 . Sed10g0499 . Cpe10g00342 Bhi03g01357 Tan03g1314 Cmetu08g0769 . Hepe04g1117 . . Cla01g01520 . . . . . . . . Cone6ag1289 . Lsi01g01145 . . Cme08g01079 . Blo06g00198 . . . . . . . Cmo03g01076 . . . . . . . . . . . . . . . . . . . . . . Csa06g02786 Chy02g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011096 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31