Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0515 ATGAGGATTATTTGTATTCTAGTTTTGATGCTTCTCTTCAGTGGGAGTTCTTCAATTGGAGATAGCAGAAATGTATCCACGAGACCTGATGTTGTCAACATTGGGGCTTTATTCTCTTTCCGTTCTATGATAGGCAAAGTCGGAAGAATTGCGGTAGAAGCTGCAGTGGATGATGTGAATTCTGATCCATCCATTTTAGGGGGGACGACGCTGAAGCTCTCTTTACATGATACCAATTACAGTGGATTTTTGGGCATCATTGAGTCCTTGCGTTTCATGGAGACTGAGACTATGGCCATAATTGGCCCCCAAAACTCTGTAACTGCTCATGTAATATCTCATATTGCAAAGGAGCTCCAAGTTCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCACTACAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTAGCTCAAATAGTAGACTACTACGAATGGAGAGAGGTGATTGCCATCTTTGTTGATGATGACCATGGTAGAAATGGTATTGCTGCATTGGGGGATCGACTCAACGAGAAACGATGTAAGATCTCACTAAAAGTACCATTGAAGCCTGATGCAAGTCGAGTTGCAGTCACCGATGCACTCGTTAAGGTGGCTATAACCGAGTCTCGGATACTTGTTGTTCACACTTATGAGACCACAGGTATGGTGGTCCTCAATGTGGCTCAACATCTTGGATTGACAGGACCTGGGTATGTGTGGATAGCCACTAACTGGCTTTCATTGCTACTCGACACAAATTCGCCTCTTCCTCCGGCTTCTATGGAAAATATTCAAGGACTTATTGCTTTGCGTCTTTATACACCAGATTCTGCACGTAAAGAGAAATTTGTTACAAGGTGGACCAATTTGACTAAGGGAAAGTCATCAAATGGCTCACTCGGATTGAGTACTTATGGATTATATGCTTACGATACTGTATGGATGCTTGCTCATGCAATAAATGCATTTCTTGATGAAGGTGGAAATCTTTCATTTTCGAATCTGTCTAAGCTAACTGGGATTAAAATTGGAAATTTGAATTTGAACTCTATGAGCGTCTTCAATGGTGGGAAGACACTACTTCAGAAAATTTTAGATGTCAATTTTACTGGAATAACAGGCCCAGTTGAGTTCACTCCAGACAGGGACTTAATTCATCCTGCATTCGAAGTGATCAATATAATCAGCACAGGGGAAAGGAGAATTGGTTATTGGTCTAACCATTCTGGCTTGTTGATTGTGCCTCCTGATACCCTTTACTCGAAATCACCTAATGAATCATGGTTTAATCAAAAGCTATCTGATGTAGTATGGCCTGGACAAACAACACAGAGGCCTCGTGGATGGGCATTTCCAAACCGTGGAAGACAGTTGAGAATCGGAGTTCCGAGACGAGTCGATTATCAAGAATTTGTTTCACAAGTAGAAGGAACTGACATGTTCAGTGGCTACTGCATTGATGTCTTCACTGCAGCAATCAGCATGTTGCCTTACACAGTCCCTTATAAGTTAATTCCTTTGGGGGATGGTGTTACTAATCCAAGTACAACCGAGCTTGTTCGTCTAATCACCATCGGGGTATTCGATGCAGCGATTGGTGACATTGCAATTATCACAAACCGAACTAGGATGGCAGATTTTACACAACCATACATCGAGTCTGGCTTGGTAGTCATAGCCCCAGTCAAGAAGTTGAACTCTAATGCTTGGGCCTTTTTACGGCCGTTCACTCGGAAAATGTGGTGTATTACTGCTGTTTCTTTTCTTGTTGTAGGAGCAGTTGTTTGGATTTTGGAGCATAGGTTAAATGATGATTTTCGTGGCCCTCCTAAGAAACAAGTTATTACCATTCTTTGGTTCAGCTTTTCAACTCTATTCTTTTCTCATCGGGAAAACACAGTCAGTACCCTCGGTCGCTTCGTGCTGCTCATATGGTTGTTTGTGGTTCTAATTATCAACTCGAGCTACACTGCAAGCTTGACCTCTATTCTTACAGTTCAACAACTTTCTTCTTCTGTCAAAGGGATTGAAACTTTGGTTTCAAACGATGACCCAATTGGCTACCAGCAGGGTTCATTCGCTCGAAACTACTTGATCGAGGAACTTGGCATTCATGAATCGAGACTTGTTCCACTCCTTTCAAAAGAACATTATGCTAAAGCCTTGAGTGACGGCCCAATGAAGAATGGTGTTGCCGCTATTATCGAAGAGCGATCATATGCAGAGCTCTTCCTTTCAACTCATTGCGAATTCAGTATCGTCGGCCAAGAGTTCACCAAAAATGGTTGGGGATTCGCTTTTCCGCGCGACTCTCCTTTAGCAGTCGACATGTCCACGGCTATTCTAAAATTGTCCGAAAATGGGGATCTTCAAAGGATCCATGATAAATGGTTAATGAAAAGTGCCTGCACATCACAAGTCACCAAAATCGAGGTGGATCGACTGCAGCTTAATAGCTTTTGGGGACTCTTTCTAATATGTGGATTAGCCTGCCTGCTCGCTCTAGCGATATACCTCTTTCAAACGGTGCGCCAATATATCAAACATTACTCAGAAGAACACGGGTCTTCCGAGCAATCCTCTCGATCTGCAAGCCTGCATCGATTTCTTTCGTTTGCAGACGAAAGGGAAGATGTATTCCGGAGTCAATCGAAGCGAAGACAGATGCAGCAGGCTTCAGTTAGAAGCATGAATGGAGAAAATTCAACAGGAAGTTCAAGAAAACTGGGCGACGGTAATGGTGATGGTTTGTATTGA 2796 42.7 MRIICILVLMLLFSGSSSIGDSRNVSTRPDVVNIGALFSFRSMIGKVGRIAVEAAVDDVNSDPSILGGTTLKLSLHDTNYSGFLGIIESLRFMETETMAIIGPQNSVTAHVISHIAKELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAQIVDYYEWREVIAIFVDDDHGRNGIAALGDRLNEKRCKISLKVPLKPDASRVAVTDALVKVAITESRILVVHTYETTGMVVLNVAQHLGLTGPGYVWIATNWLSLLLDTNSPLPPASMENIQGLIALRLYTPDSARKEKFVTRWTNLTKGKSSNGSLGLSTYGLYAYDTVWMLAHAINAFLDEGGNLSFSNLSKLTGIKIGNLNLNSMSVFNGGKTLLQKILDVNFTGITGPVEFTPDRDLIHPAFEVINIISTGERRIGYWSNHSGLLIVPPDTLYSKSPNESWFNQKLSDVVWPGQTTQRPRGWAFPNRGRQLRIGVPRRVDYQEFVSQVEGTDMFSGYCIDVFTAAISMLPYTVPYKLIPLGDGVTNPSTTELVRLITIGVFDAAIGDIAIITNRTRMADFTQPYIESGLVVIAPVKKLNSNAWAFLRPFTRKMWCITAVSFLVVGAVVWILEHRLNDDFRGPPKKQVITILWFSFSTLFFSHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSSVKGIETLVSNDDPIGYQQGSFARNYLIEELGIHESRLVPLLSKEHYAKALSDGPMKNGVAAIIEERSYAELFLSTHCEFSIVGQEFTKNGWGFAFPRDSPLAVDMSTAILKLSENGDLQRIHDKWLMKSACTSQVTKIEVDRLQLNSFWGLFLICGLACLLALAIYLFQTVRQYIKHYSEEHGSSEQSSRSASLHRFLSFADEREDVFRSQSKRRQMQQASVRSMNGENSTGSSRKLGDGNGDGLY 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3349165 3355063 + Sed0005721.1 Sed10g0515 727019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0515 931 CDD PBP1_GABAb_receptor_plant 33 424 IPR044440 -
Sed10g0515 931 Gene3D - 774 810 - -
Sed10g0515 931 Pfam Receptor family ligand binding region 50 408 IPR001828 -
Sed10g0515 931 MobiDBLite consensus disorder prediction 894 931 - -
Sed10g0515 931 PIRSF IGluLR_plant 1 927 IPR017103 -
Sed10g0515 931 Gene3D - 740 773 - -
Sed10g0515 931 Gene3D - 147 424 - -
Sed10g0515 931 Gene3D - 50 399 - -
Sed10g0515 931 FunFam Glutamate receptor 582 712 - -
Sed10g0515 931 FunFam Glutamate receptor 147 304 - -
Sed10g0515 931 Gene3D - 467 581 - -
Sed10g0515 931 CDD GluR_Plant 469 811 - -
Sed10g0515 931 MobiDBLite consensus disorder prediction 898 922 - -
Sed10g0515 931 Pfam Ligated ion channel L-glutamate- and glycine-binding site 486 574 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed10g0515 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 895 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed10g0515 931 SMART GluR_14 472 813 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed10g0515 931 SUPERFAMILY Periplasmic binding protein-like I 28 462 IPR028082 -
Sed10g0515 931 Pfam Ligand-gated ion channel 592 844 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed10g0515 931 Gene3D - 582 701 - -
Sed10g0515 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Sed10g0515 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Sed10g0515 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Sed10g0515 931 FunFam Glutamate receptor 466 582 - -
Sed10g0515 931 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Sed10g0515 931 FunFam Glutamate receptor 708 815 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3783 Sed-Chr4:46405678 Sed10g0515 Sed-Chr10:3349165 6.40E-276 dispersed
Sed05g2018 Sed-Chr5:33393657 Sed10g0515 Sed-Chr10:3349165 1.70E-250 dispersed
Sed05g2149 Sed-Chr5:34485877 Sed10g0515 Sed-Chr10:3349165 2.30E-265 dispersed
Sed10g0515 Sed-Chr10:3349165 Sed13g2207 Sed-Chr13:26573312 2.20E-303 dispersed
Sed10g0515 Sed-Chr10:3349165 Sed13g2206 Sed-Chr13:26573312 3.1e-310 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0515 K05387 - csv:101213408 1587.01