Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0529 ATGGAGCCCACAAATGGAAGTAATGATCCTAGCAACAACCCAAATTTGGCCTCAAAGCAAAGACTTCGTTGGACACACGAGCTTCACGAACGATTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCTAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTGCAGAAATATCGACTCGCAAAATACCTTCCGGACTCGTCATCTGATGGGAAAAAGCCTGAGAAGAAGGATTCAAGTGACATTCTATCAAATATTGATGGCTCTTCGGGAATCCAAATTACTGAAGCACTTAAGCTGCAAATGGAAGTCCAGAAGCGACTGCATGAGCAGTTAGAGGTACAGAGACAGCTGCAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATCGAAGAGCAACAGAAGCTTAATGGGGTTCTTTCAGGAGCTCAGGCTGCCTCTTCCTTTGCTGCTTCTGGTGATAGCTGCCCGGAAACTGATAAAAACAACCCGCCAACACCTGCGCCCACGTCCGAGTCTCCTCGCCAGGAGAAAGCATTAAAGGAACGTGCCCAAGCCAGGAGTGTCTCTATTGATGGTTCTTTCTCGTCTCATAACGAACCATTGACGCCGGATTCTGGTTGCCATAGCTCCCCAAATGAGAGCTCAAGGCCTGTAAAGAAGCAAAGGCAGCACAGGGATGATGCATTCTCCAAATCAGAGATGATACTTGCACATCACATACTGGAGTCAAGTCTAAACTCCAGTTTGAAGGAATCTCACTCTGTTTTTCCAGCCAGGGAAAAGTTCGATCCTTCGTCTGGGATATCGATAGGAGACGATGACCCGTTGGACTAA 885 46.89 MEPTNGSNDPSNNPNLASKQRLRWTHELHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKPEKKDSSDILSNIDGSSGIQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLNGVLSGAQAASSFAASGDSCPETDKNNPPTPAPTSESPRQEKALKERAQARSVSIDGSFSSHNEPLTPDSGCHSSPNESSRPVKKQRQHRDDAFSKSEMILAHHILESSLNSSLKESHSVFPAREKFDPSSGISIGDDDPLD 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3414942 3419721 - Sed0027716.1 Sed10g0529 727033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0529 294 MobiDBLite consensus disorder prediction 79 95 - -
Sed10g0529 294 MobiDBLite consensus disorder prediction 232 248 - -
Sed10g0529 294 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Sed10g0529 294 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Sed10g0529 294 Gene3D - 18 77 - -
Sed10g0529 294 MobiDBLite consensus disorder prediction 205 231 - -
Sed10g0529 294 FunFam Myb family transcription factor 18 76 - -
Sed10g0529 294 Coils Coil 108 128 - -
Sed10g0529 294 Pfam Myb-like DNA-binding domain 21 72 IPR001005 -
Sed10g0529 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 247 IPR046955 GO:0003700(InterPro)
Sed10g0529 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677(InterPro)
Sed10g0529 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Sed10g0529 294 MobiDBLite consensus disorder prediction 263 294 - -
Sed10g0529 294 MobiDBLite consensus disorder prediction 77 99 - -
Sed10g0529 294 MobiDBLite consensus disorder prediction 166 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0722 Sed-Chr6:7062865 Sed10g0529 Sed-Chr10:3414942 8.90E-29 dispersed
Sed10g0529 Sed-Chr10:3414942 Sed12g1207 Sed-Chr12:8236379 2.20E-44 dispersed
Sed10g0529 Sed-Chr10:3414942 Sed10g0530 Sed-Chr10:3426951 1.60E-21 tandem
Sed10g0529 Sed-Chr10:3414942 Sed14g1265 Sed-Chr14:21700203 2.70E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39711 PF00249 Myb_DNA-binding 2.70E-08 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0529 - - - 0.0