Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0547 | ATGGCTTCAAGTGCTGGTTCCAAAGCTTTCTCAAATCAGCCACAAACTCTAGCCAAGGGTGAAATGGCTAATGGGAAGGACGCCGAGCCGTTGCCTCCGCAGATATCGAAGTTAAGTAAGCCGGAATCAGTTACTTCTGAGCAGTTTACATCAGTAAAGAGTATCTCAAAGAAGGATATGGAAATATCTTTAGACAAACCGGTATCGAATCAAGATGGATCTGCCAAGTTGTTGGCTGAAAATTTTAATATCAGCATTTCGTCGCCGGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGCTAGATACTCACCTGGAAGCTCACTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCATTTTCTGTCAAAGTAAGTGATGGGACTAGCTGTCTTGCAAAGACGAGTGGAAGTGCCAAGATTAGCGACCATGGTACCTTTGTCGAGAGTGGAAAGAGCAGCATATGTAGAGGGAGTACGAGCAGCGATATAAGTGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCTAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCGAAAGACGGGGCGATGGGATTAAGTCATTTTAGGCTTTTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGAGGAACAAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAATTGCTTCGGGCACAGACTGAAAGAGAAATACTTCAATCTCTTGATCACCCGTTCCTTCCAACGTTATACACCCACTTCGAGACCGAGAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCAATGGAATACCTGCACATGCTCGGTATTGTGTACCGCGATCTTAAGCCAGAAAATGTCCTCGTGAGGGAAGATGGACACATAATGCTTTCGGACTTCGACCTGTCTCTCCGTTGCTCTGTCAGTCCAACTCTTGTAAAAAATCTCTCTGGGGAGTCTGATGGTTTAAGAAAGAACACGGGTTACTGTGCGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACGACCTGCTTCTCGCCTCGCCTCTTTTCTAGTAAGTCAAAGAAGGAAAGGAAGCCCAAAATTGATATGGGAAACCAGTTAGGCCCATTGCTCGAGCTGATTGCCGAACCAACTGATGCGCGATCCATGTCTTTCGTTGGAACTCATGAGTACTTGGCACCCGAGATCATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTGTTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACGTTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACAAGTTGTGAGTTTTGCTGCGAAAGATCTCATAAAGGGATTGCTAGTGAAGGAACCACAACATAGATTGGCTTTTAAACGTGGAGCAACTGAGATCAAGCAGCATCCATTCTTTGAAGGTGTGAACTGGGCATTAATACGTTGTGCTACTCCTCCCGAAATCCCAAGGCCAGTCGAAATCGAGCGAATACCACATGCAGTGGCATCAACCAGTGAAAAGGCTGCTGCTATAGCAGCAGCTGCAGATAAAAAAGCTTCCGATAATTATCTCGAGTTTGATTTCTTTTAG | 1830 | 44.7 | MASSAGSKAFSNQPQTLAKGEMANGKDAEPLPPQISKLSKPESVTSEQFTSVKSISKKDMEISLDKPVSNQDGSAKLLAENFNISISSPGLKQTSTEVDSPHNEARYSPGSSLDQEKKTSEYGSVKSSSFSVKVSDGTSCLAKTSGSAKISDHGTFVESGKSSICRGSTSSDISDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLSHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCSVSPTLVKNLSGESDGLRKNTGYCAQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQLGPLLELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAQVVSFAAKDLIKGLLVKEPQHRLAFKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAAADKKASDNYLEFDFF | 609 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3536636 | 3542085 | + | Sed0017780.1 | Sed10g0547 | 727051 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0547 | 609 | SMART | serkin_6 | 215 | 552 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g0547 | 609 | MobiDBLite | consensus disorder prediction | 38 | 57 | - | - | |
Sed10g0547 | 609 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Sed10g0547 | 609 | Gene3D | Transferase(Phosphotransferase) domain 1 | 446 | 570 | - | - | |
Sed10g0547 | 609 | FunFam | Serine/threonine-protein kinase D6PK-like | 213 | 298 | - | - | |
Sed10g0547 | 609 | MobiDBLite | consensus disorder prediction | 88 | 120 | - | - | |
Sed10g0547 | 609 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
Sed10g0547 | 609 | SUPERFAMILY | Protein kinase-like (PK-like) | 190 | 578 | IPR011009 | - | |
Sed10g0547 | 609 | PANTHER | FLIPPASE KINASE 1-RELATED | 94 | 584 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Sed10g0547 | 609 | ProSiteProfiles | Protein kinase domain profile. | 215 | 552 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g0547 | 609 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 336 | 348 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed10g0547 | 609 | Pfam | Protein kinase domain | 216 | 368 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g0547 | 609 | Pfam | Protein kinase domain | 449 | 552 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g0547 | 609 | Gene3D | Transferase(Phosphotransferase) domain 1 | 299 | 367 | - | - | |
Sed10g0547 | 609 | FunFam | serine/threonine-protein kinase D6PK-like | 299 | 366 | - | - | |
Sed10g0547 | 609 | CDD | STKc_phototropin_like | 213 | 575 | - | - | |
Sed10g0547 | 609 | FunFam | serine/threonine-protein kinase D6PK-like | 447 | 570 | - | - | |
Sed10g0547 | 609 | Gene3D | Phosphorylase Kinase; domain 1 | 213 | 298 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0547 | Sed-Chr10:3536636 | Sed14g1271 | Sed-Chr14:21747693 | 3.20E-271 | dispersed | |
Sed11g0101 | Sed-Chr11:933784 | Sed10g0547 | Sed-Chr10:3536636 | 1.40E-107 | transposed | |
Sed10g0547 | Sed-Chr10:3536636 | Sed14g1270 | Sed-Chr14:21747693 | 3.20E-271 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79824 | PF00069 | Pkinase | 6.10E-38 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0547 | K08286 | - | csv:101209748 | 1037.71 |