Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0547 ATGGCTTCAAGTGCTGGTTCCAAAGCTTTCTCAAATCAGCCACAAACTCTAGCCAAGGGTGAAATGGCTAATGGGAAGGACGCCGAGCCGTTGCCTCCGCAGATATCGAAGTTAAGTAAGCCGGAATCAGTTACTTCTGAGCAGTTTACATCAGTAAAGAGTATCTCAAAGAAGGATATGGAAATATCTTTAGACAAACCGGTATCGAATCAAGATGGATCTGCCAAGTTGTTGGCTGAAAATTTTAATATCAGCATTTCGTCGCCGGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGCTAGATACTCACCTGGAAGCTCACTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCATTTTCTGTCAAAGTAAGTGATGGGACTAGCTGTCTTGCAAAGACGAGTGGAAGTGCCAAGATTAGCGACCATGGTACCTTTGTCGAGAGTGGAAAGAGCAGCATATGTAGAGGGAGTACGAGCAGCGATATAAGTGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCTAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCGAAAGACGGGGCGATGGGATTAAGTCATTTTAGGCTTTTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGAGGAACAAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAATTGCTTCGGGCACAGACTGAAAGAGAAATACTTCAATCTCTTGATCACCCGTTCCTTCCAACGTTATACACCCACTTCGAGACCGAGAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCAATGGAATACCTGCACATGCTCGGTATTGTGTACCGCGATCTTAAGCCAGAAAATGTCCTCGTGAGGGAAGATGGACACATAATGCTTTCGGACTTCGACCTGTCTCTCCGTTGCTCTGTCAGTCCAACTCTTGTAAAAAATCTCTCTGGGGAGTCTGATGGTTTAAGAAAGAACACGGGTTACTGTGCGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACGACCTGCTTCTCGCCTCGCCTCTTTTCTAGTAAGTCAAAGAAGGAAAGGAAGCCCAAAATTGATATGGGAAACCAGTTAGGCCCATTGCTCGAGCTGATTGCCGAACCAACTGATGCGCGATCCATGTCTTTCGTTGGAACTCATGAGTACTTGGCACCCGAGATCATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTGTTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACGTTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACAAGTTGTGAGTTTTGCTGCGAAAGATCTCATAAAGGGATTGCTAGTGAAGGAACCACAACATAGATTGGCTTTTAAACGTGGAGCAACTGAGATCAAGCAGCATCCATTCTTTGAAGGTGTGAACTGGGCATTAATACGTTGTGCTACTCCTCCCGAAATCCCAAGGCCAGTCGAAATCGAGCGAATACCACATGCAGTGGCATCAACCAGTGAAAAGGCTGCTGCTATAGCAGCAGCTGCAGATAAAAAAGCTTCCGATAATTATCTCGAGTTTGATTTCTTTTAG 1830 44.7 MASSAGSKAFSNQPQTLAKGEMANGKDAEPLPPQISKLSKPESVTSEQFTSVKSISKKDMEISLDKPVSNQDGSAKLLAENFNISISSPGLKQTSTEVDSPHNEARYSPGSSLDQEKKTSEYGSVKSSSFSVKVSDGTSCLAKTSGSAKISDHGTFVESGKSSICRGSTSSDISDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLSHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCSVSPTLVKNLSGESDGLRKNTGYCAQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQLGPLLELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAQVVSFAAKDLIKGLLVKEPQHRLAFKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAAADKKASDNYLEFDFF 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3536636 3542085 + Sed0017780.1 Sed10g0547 727051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0547 609 SMART serkin_6 215 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0547 609 MobiDBLite consensus disorder prediction 38 57 - -
Sed10g0547 609 MobiDBLite consensus disorder prediction 1 19 - -
Sed10g0547 609 Gene3D Transferase(Phosphotransferase) domain 1 446 570 - -
Sed10g0547 609 FunFam Serine/threonine-protein kinase D6PK-like 213 298 - -
Sed10g0547 609 MobiDBLite consensus disorder prediction 88 120 - -
Sed10g0547 609 MobiDBLite consensus disorder prediction 1 71 - -
Sed10g0547 609 SUPERFAMILY Protein kinase-like (PK-like) 190 578 IPR011009 -
Sed10g0547 609 PANTHER FLIPPASE KINASE 1-RELATED 94 584 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed10g0547 609 ProSiteProfiles Protein kinase domain profile. 215 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0547 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0547 609 Pfam Protein kinase domain 216 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0547 609 Pfam Protein kinase domain 449 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0547 609 Gene3D Transferase(Phosphotransferase) domain 1 299 367 - -
Sed10g0547 609 FunFam serine/threonine-protein kinase D6PK-like 299 366 - -
Sed10g0547 609 CDD STKc_phototropin_like 213 575 - -
Sed10g0547 609 FunFam serine/threonine-protein kinase D6PK-like 447 570 - -
Sed10g0547 609 Gene3D Phosphorylase Kinase; domain 1 213 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0547 Sed-Chr10:3536636 Sed14g1271 Sed-Chr14:21747693 3.20E-271 dispersed
Sed11g0101 Sed-Chr11:933784 Sed10g0547 Sed-Chr10:3536636 1.40E-107 transposed
Sed10g0547 Sed-Chr10:3536636 Sed14g1270 Sed-Chr14:21747693 3.20E-271 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79824 PF00069 Pkinase 6.10E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0547 K08286 - csv:101209748 1037.71