Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0563 ATGCAAGCGTCTCAGAATCGGCAGTCTTCATCTGAAATACATGAGATGTATCACCAGTCTGTACAAGGAATGGATTCCTTCTGTTCATCTCATTTCCAAGTATTGGAGAACAATGTCTCTCCTGATACAAGCAGTCAGGGAAACAGTGTTAACTTCTATAAGGATCAGTTCTTTACTCTGGAATCATCCCCAGCTACTGCTGATCTGAGTGCCTGTAATTCCCCTTCTGCTGTTAGTGTGCTGTCTTCGAGGAGCCCCTTCTCACCTCAAGGCTCTCAAACATGCTCTTCGGATCAGCATCATTCATTTGACAATGCATATGGATCACCGCTAAGTGGATGCTCGGTATCTGATGATGATAATGAATTGAAGCATAAGCTGAAGGAATTAGAAGTTTCTTTGTTGGGGCCTGAATCTGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGTGCACATCGAGATGCTTCAGTGGCAAAGTGGAACTTGAATCAAATAGTTGAAATGATTCCTAGACTCAGTCTCCAGGACGTACTTATCCATTGCGCCGAAGCAATTCATGAGAGTGATTTAAATGCGGCAACATTATTTATGGATGTTTTAGGACAGATGGTTTCGGTCTCTGGTGATCCAGCCCAGAGGTTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCAAGGTTGGAACGATCTGGGAGTGCAATATACAAGGCCCTAAAGTGCGAAGAGCCGACAAGCTCTGAACTAATGTCCTATATGTCTGTTCTATTCCAGATCTGCCCATACTTCAAATTTGCTTATACTTCTGCAAATGCTTTCATTTGGGAGGCAATGATAAATGAACCCGTAATCCACATTATTGATTTTCAAATTGCACAGGGTAGTCAGTACATACCTCTCATTCAGGATCTTGCCAATCGGCCCGGTGGACCCCCACTTCTTCTTCGCATAACCTGTGCAGATGATTCCCAATCAGCTCATGCTCGGGGAGGGGGACTTCAAATTGTCGGACAGAAGCTAGCTCAACTGTGTCGGTCTAAAGGAATTCCCTTTCAATTTCATGCTGCTGGGGTATCTGGTTGCGAGGTGGAACGTGGTAATCTTATAATGAATCCCGGAGAAGCATTGGCAGTAAATTTTCCATATGCATTGCACCACATGCCAGATGAGAGCGTAAGCACACATAATCATCGAGACCGACTTCTTAGGCTGGTTAAAAGTCTGTCGCCGAAAATAGTAACAATAGTCGAGCAGGAATCCAACACAAACACATCCCCATTCTTGTTACGCTTTAAAGAGACGCTGAATTTCTACACTGCTATGTTTGAATCAATAGACGTAGCTCGTTCAAGAGACGATAAACAGCGAATCAGGGCAGAGCAGCACTGTGTGGCCCGAGACATAGTGAACATGGTAGCTTGCGAGGGGTTCGAAAGGGTAGAACGACACGAACTGCATAGAAAGTGGATAATGAGAATGAATATGGCTGGTTTCACTCAATATCCAATGAGCTCCTCCGTAACTGGAGCCGTCAAGAATTTGCTGAGGGAGTTCAACGAAAACTACAGGCTCCAAGAAGCGAGTGGGGTTCTCTACATTGGCTGGAAAAACCGAGCAATTGCAGCCACCTCAGCTTGGAGATGA 1644 45.01 MQASQNRQSSSEIHEMYHQSVQGMDSFCSSHFQVLENNVSPDTSSQGNSVNFYKDQFFTLESSPATADLSACNSPSAVSVLSSRSPFSPQGSQTCSSDQHHSFDNAYGSPLSGCSVSDDDNELKHKLKELEVSLLGPESDIVDSCYCSFRGGAHRDASVAKWNLNQIVEMIPRLSLQDVLIHCAEAIHESDLNAATLFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPTSSELMSYMSVLFQICPYFKFAYTSANAFIWEAMINEPVIHIIDFQIAQGSQYIPLIQDLANRPGGPPLLLRITCADDSQSAHARGGGLQIVGQKLAQLCRSKGIPFQFHAAGVSGCEVERGNLIMNPGEALAVNFPYALHHMPDESVSTHNHRDRLLRLVKSLSPKIVTIVEQESNTNTSPFLLRFKETLNFYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELHRKWIMRMNMAGFTQYPMSSSVTGAVKNLLREFNENYRLQEASGVLYIGWKNRAIAATSAWR 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3639979 3643348 + Sed0016517.1 Sed10g0563 727067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0563 547 ProSiteProfiles GRAS family profile. 167 547 IPR005202 -
Sed10g0563 547 Pfam GRAS domain family 177 547 IPR005202 -
Sed10g0563 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 131 546 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0563 K27748 - - csv:101207883 904.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0563 Sed-Chr10:3639979 Sed11g2281 Sed-Chr11:35982823 7.80E-59 dispersed
Sed10g0563 Sed-Chr10:3639979 Sed10g0564 Sed-Chr10:3639979 0.00E+00 tandem
Sed10g0563 Sed-Chr10:3639979 Sed14g1298 Sed-Chr14:21901574 8.20E-250 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g1258 . 75 741 GRAS Transcription Factor Family AT2G37650 55.4 1.0e-199 694.5
Sed04g1259 . 75 741 GRAS Transcription Factor Family AT2G37650 55.4 1.0e-199 694.5
Sed04g1260 . 75 741 GRAS Transcription Factor Family AT2G37650 55.4 1.0e-199 694.5
Sed04g1261 . 75 741 GRAS Transcription Factor Family AT2G37650 55.4 1.0e-199 694.5
Sed13g1411 . 234 688 GRAS Transcription Factor Family AT3G46600 51.4 3.6e-128 456.4
Sed01g1103 . 227 680 GRAS Transcription Factor Family AT3G46600 50.2 4.9e-125 446.0
Sed14g0906 . 13 441 GRAS Transcription Factor Family AT3G49950 58.9 1.5e-134 477.2
Sed07g1687 . 78 517 GRAS Transcription Factor Family AT4G36710 52.0 4.0e-123 439.5
Sed13g0711 . 11 418 GRAS Transcription Factor Family AT5G41920 66.3 5.7e-147 518.5
Sed14g0535 . 411 787 GRAS Transcription Factor Family AT5G41920 56.6 5.7e-115 412.1
Sed10g0914 . 1 581 GRAS Transcription Factor Family AT5G66770 56.8 9.9e-169 591.3
Sed07g1702 . 4 534 GRAS Transcription Factor Family AT5G66770 56.1 1.6e-155 547.4
Sed05g0961 . 1 539 GRAS Transcription Factor Family AT1G50600 55.5 3.1e-161 566.2
Sed05g0962 . 1 539 GRAS Transcription Factor Family AT1G50600 55.5 3.1e-161 566.2
Sed01g0552 . 57 545 GRAS Transcription Factor Family AT1G50600 58.5 3.1e-161 566.2
Sed01g0551 . 57 545 GRAS Transcription Factor Family AT1G50600 58.5 3.1e-161 566.2
Sed01g0553 . 57 545 GRAS Transcription Factor Family AT1G50600 58.5 3.1e-161 566.2
Sed08g2939 . 44 543 GRAS Transcription Factor Family AT1G50600 57.3 2.7e-157 553.1
Sed07g2646 . 216 586 GRAS Transcription Factor Family AT1G50600 62.3 3.8e-135 479.6
Sed14g1298 . 91 529 GRAS Transcription Factor Family AT1G50600 53.6 6.7e-132 468.8
Sed10g0563 . 109 547 GRAS Transcription Factor Family AT1G50600 54.3 2.5e-131 466.8
Sed10g0564 . 109 547 GRAS Transcription Factor Family AT1G50600 54.3 2.5e-131 466.8
Sed07g2856 . 200 567 GRAS Transcription Factor Family AT1G50600 50.5 4.8e-106 382.9
Sed07g2857 . 200 567 GRAS Transcription Factor Family AT1G50600 50.5 4.8e-106 382.9
Sed07g2858 . 200 567 GRAS Transcription Factor Family AT1G50600 50.5 4.8e-106 382.9
Sed03g1115 . 39 542 GRAS Transcription Factor Family AT1G14920 68.5 3.9e-196 682.2
Sed01g2998 . 41 550 GRAS Transcription Factor Family AT1G14920 60.4 9.7e-163 571.2
Sed05g2687 . 1 553 GRAS Transcription Factor Family AT1G14920 52.5 2.8e-154 543.1
Sed08g2851 . 46 414 GRAS Transcription Factor Family AT1G55580 52.0 2.0e-105 380.6
Sed03g1115 . 1 543 GRAS Transcription Factor Family AT1G66350 57.7 1.9e-168 590.1
Sed01g2998 . 41 547 GRAS Transcription Factor Family AT1G66350 61.1 9.9e-165 577.8
Sed05g2687 . 1 550 GRAS Transcription Factor Family AT1G66350 53.9 1.2e-154 544.3
Sed01g0841 . 154 666 GRAS Transcription Factor Family AT1G07520 51.0 1.8e-140 497.3
Sed05g0961 . 19 539 GRAS Transcription Factor Family AT5G48150 64.9 5.0e-190 661.8
Sed05g0962 . 19 539 GRAS Transcription Factor Family AT5G48150 64.9 5.0e-190 661.8
Sed01g0552 . 19 545 GRAS Transcription Factor Family AT5G48150 64.2 2.7e-188 656.0
Sed01g0551 . 19 545 GRAS Transcription Factor Family AT5G48150 64.2 2.7e-188 656.0
Sed01g0553 . 19 545 GRAS Transcription Factor Family AT5G48150 64.2 2.7e-188 656.0
Sed08g2939 . 17 543 GRAS Transcription Factor Family AT5G48150 57.5 1.1e-163 574.3
Sed14g1298 . 41 529 GRAS Transcription Factor Family AT5G48150 53.2 6.2e-140 495.4
Sed10g0563 . 97 547 GRAS Transcription Factor Family AT5G48150 55.8 2.0e-138 490.3
Sed10g0564 . 97 547 GRAS Transcription Factor Family AT5G48150 55.8 2.0e-138 490.3
Sed07g2646 . 216 586 GRAS Transcription Factor Family AT5G48150 63.4 9.9e-138 488.0
Sed03g1115 . 41 542 GRAS Transcription Factor Family AT2G01570 67.9 6.4e-200 694.9
Sed01g2998 . 42 548 GRAS Transcription Factor Family AT2G01570 58.7 1.6e-163 573.9
Sed05g2687 . 27 551 GRAS Transcription Factor Family AT2G01570 54.4 5.7e-156 548.9
Sed03g1115 . 1 543 GRAS Transcription Factor Family AT1G66350 57.7 1.9e-168 590.1
Sed01g2998 . 41 547 GRAS Transcription Factor Family AT1G66350 61.1 9.9e-165 577.8
Sed05g2687 . 1 550 GRAS Transcription Factor Family AT1G66350 53.9 1.2e-154 544.3
Sed03g1115 . 41 542 GRAS Transcription Factor Family AT3G03450 62.3 9.3e-169 591.3
Sed05g2687 . 27 551 GRAS Transcription Factor Family AT3G03450 57.4 4.8e-157 552.4
Sed01g2998 . 42 548 GRAS Transcription Factor Family AT3G03450 59.3 4.8e-157 552.4
Sed03g1115 . 37 542 GRAS Transcription Factor Family AT5G17490 58.9 3.9e-156 549.3
Sed01g2998 . 41 550 GRAS Transcription Factor Family AT5G17490 57.4 4.7e-146 515.8
Sed05g2687 . 28 551 GRAS Transcription Factor Family AT5G17490 52.9 2.1e-138 490.3
Sed07g2856 . 1 567 GRAS Transcription Factor Family AT1G21450 56.8 1.8e-170 597.0
Sed07g2857 . 1 567 GRAS Transcription Factor Family AT1G21450 56.8 1.8e-170 597.0
Sed07g2858 . 1 567 GRAS Transcription Factor Family AT1G21450 56.8 1.8e-170 597.0
Sed05g0961 . 162 539 GRAS Transcription Factor Family AT1G21450 52.8 2.6e-116 417.2
Sed05g0962 . 162 539 GRAS Transcription Factor Family AT1G21450 52.8 2.6e-116 417.2
Sed08g2939 . 167 543 GRAS Transcription Factor Family AT1G21450 51.1 2.5e-111 400.6
Sed01g1103 . 306 680 GRAS Transcription Factor Family AT5G59450 55.9 2.4e-125 447.2
Sed04g1258 . 355 741 GRAS Transcription Factor Family AT5G59450 53.8 5.2e-120 429.5
Sed04g1259 . 355 741 GRAS Transcription Factor Family AT5G59450 53.8 5.2e-120 429.5
Sed04g1260 . 355 741 GRAS Transcription Factor Family AT5G59450 53.8 5.2e-120 429.5
Sed04g1261 . 355 741 GRAS Transcription Factor Family AT5G59450 53.8 5.2e-120 429.5
Sed05g2984 . 400 781 GRAS Transcription Factor Family AT5G59450 50.3 2.0e-111 401.0
Sed10g0563 . 1 547 GRAS Transcription Factor Family AT4G17230 57.8 1.6e-170 597.0
Sed10g0564 . 1 547 GRAS Transcription Factor Family AT4G17230 57.8 1.6e-170 597.0
Sed14g1298 . 41 529 GRAS Transcription Factor Family AT4G17230 59.6 9.0e-161 564.7
Sed05g0961 . 27 539 GRAS Transcription Factor Family AT4G17230 51.0 4.6e-141 499.2
Sed05g0962 . 27 539 GRAS Transcription Factor Family AT4G17230 51.0 4.6e-141 499.2
Sed01g0552 . 57 545 GRAS Transcription Factor Family AT4G17230 52.3 1.1e-139 494.6
Sed01g0551 . 57 545 GRAS Transcription Factor Family AT4G17230 52.3 1.1e-139 494.6
Sed01g0553 . 57 545 GRAS Transcription Factor Family AT4G17230 52.3 1.1e-139 494.6
Sed07g2646 . 213 586 GRAS Transcription Factor Family AT4G17230 52.4 1.9e-110 397.5
Sed05g0961 . 160 539 GRAS Transcription Factor Family AT2G04890 72.4 2.0e-160 563.1
Sed05g0962 . 160 539 GRAS Transcription Factor Family AT2G04890 72.4 2.0e-160 563.1
Sed01g0552 . 134 545 GRAS Transcription Factor Family AT2G04890 66.6 5.6e-158 555.1
Sed01g0551 . 134 545 GRAS Transcription Factor Family AT2G04890 66.6 5.6e-158 555.1
Sed01g0553 . 134 545 GRAS Transcription Factor Family AT2G04890 66.6 5.6e-158 555.1
Sed08g2939 . 165 543 GRAS Transcription Factor Family AT2G04890 63.9 4.7e-141 498.8
Sed07g2646 . 216 586 GRAS Transcription Factor Family AT2G04890 59.8 3.5e-128 456.1
Sed14g1298 . 150 529 GRAS Transcription Factor Family AT2G04890 56.8 9.6e-118 421.4
Sed10g0563 . 167 547 GRAS Transcription Factor Family AT2G04890 56.4 2.4e-116 416.8
Sed10g0564 . 167 547 GRAS Transcription Factor Family AT2G04890 56.4 2.4e-116 416.8
Sed07g2291 . 1 462 GRAS Transcription Factor Family AT1G50420 60.7 2.1e-156 550.1
Sed04g2621 . 1 461 GRAS Transcription Factor Family AT1G50420 58.8 6.5e-150 528.5
Sed04g2622 . 1 461 GRAS Transcription Factor Family AT1G50420 58.8 6.5e-150 528.5
Sed04g1720 . 413 776 GRAS Transcription Factor Family AT4G00150 54.6 2.0e-102 370.9
Sed07g1702 . 19 534 GRAS Transcription Factor Family AT3G50650 53.0 4.4e-139 492.7
Sed14g0535 . 161 785 GRAS Transcription Factor Family AT3G54220 62.1 7.3e-205 711.4
Sed13g0711 . 54 416 GRAS Transcription Factor Family AT3G54220 60.7 1.2e-125 448.4
Sed10g0719 . 87 488 GRAS Transcription Factor Family AT4G37650 66.4 2.1e-157 553.5
Sed01g0460 . 106 500 GRAS Transcription Factor Family AT4G37650 56.4 3.8e-127 453.0
Sed09g0401 . 61 461 GRAS Transcription Factor Family AT4G37650 50.5 5.4e-113 406.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006844 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 0 1 1 3 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39715 PF03514 GRAS 1.30E-120 CL0063 Sed TF