Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0564 ATGCAAGCGTCTCAGAATCGGCAGTCTTCATCTGAAATACATGAGATGTATCACCAGTCTGTACAAGGAATGGATTCCTTCTGTTCATCTCATTTCCAAGTATTGGAGAACAATGTCTCTCCTGATACAAGCAGTCAGGGAAACAGTGTTAACTTCTATAAGGATCAGTTCTTTACTCTGGAATCATCCCCAGCTACTGCTGATCTGAGTGCCTGTAATTCCCCTTCTGCTGTTAGTGTGCTGTCTTCGAGGAGCCCCTTCTCACCTCAAGGCTCTCAAACATGCTCTTCGGATCAGCATCATTCATTTGACAATGCATATGGATCACCGCTAAGTGGATGCTCGGTATCTGATGATGATAATGAATTGAAGCATAAGCTGAAGGAATTAGAAGTTTCTTTGTTGGGGCCTGAATCTGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGTGCACATCGAGATGCTTCAGTGGCAAAGTGGAACTTGAATCAAATAGTTGAAATGATTCCTAGACTCAGTCTCCAGGACGTACTTATCCATTGCGCCGAAGCAATTCATGAGAGTGATTTAAATGCGGCAACATTATTTATGGATGTTTTAGGACAGATGGTTTCGGTCTCTGGTGATCCAGCCCAGAGGTTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCAAGGTTGGAACGATCTGGGAGTGCAATATACAAGGCCCTAAAGTGCGAAGAGCCGACAAGCTCTGAACTAATGTCCTATATGTCTGTTCTATTCCAGATCTGCCCATACTTCAAATTTGCTTATACTTCTGCAAATGCTTTCATTTGGGAGGCAATGATAAATGAACCCGTAATCCACATTATTGATTTTCAAATTGCACAGGGTAGTCAGTACATACCTCTCATTCAGGATCTTGCCAATCGGCCCGGTGGACCCCCACTTCTTCTTCGCATAACCTGTGCAGATGATTCCCAATCAGCTCATGCTCGGGGAGGGGGACTTCAAATTGTCGGACAGAAGCTAGCTCAACTGTGTCGGTCTAAAGGAATTCCCTTTCAATTTCATGCTGCTGGGGTATCTGGTTGCGAGGTGGAACGTGGTAATCTTATAATGAATCCCGGAGAAGCATTGGCAGTAAATTTTCCATATGCATTGCACCACATGCCAGATGAGAGCGTAAGCACACATAATCATCGAGACCGACTTCTTAGGCTGGTTAAAAGTCTGTCGCCGAAAATAGTAACAATAGTCGAGCAGGAATCCAACACAAACACATCCCCATTCTTGTTACGCTTTAAAGAGACGCTGAATTTCTACACTGCTATGTTTGAATCAATAGACGTAGCTCGTTCAAGAGACGATAAACAGCGAATCAGGGCAGAGCAGCACTGTGTGGCCCGAGACATAGTGAACATGGTAGCTTGCGAGGGGTTCGAAAGGGTAGAACGACACGAACTGCATAGAAAGTGGATAATGAGAATGAATATGGCTGGTTTCACTCAATATCCAATGAGCTCCTCCGTAACTGGAGCCGTCAAGAATTTGCTGAGGGAGTTCAACGAAAACTACAGGCTCCAAGAAGCGAGTGGGGTTCTCTACATTGGCTGGAAAAACCGAGCAATTGCAGCCACCTCAGCTTGGAGATGA 1644 45.01 MQASQNRQSSSEIHEMYHQSVQGMDSFCSSHFQVLENNVSPDTSSQGNSVNFYKDQFFTLESSPATADLSACNSPSAVSVLSSRSPFSPQGSQTCSSDQHHSFDNAYGSPLSGCSVSDDDNELKHKLKELEVSLLGPESDIVDSCYCSFRGGAHRDASVAKWNLNQIVEMIPRLSLQDVLIHCAEAIHESDLNAATLFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPTSSELMSYMSVLFQICPYFKFAYTSANAFIWEAMINEPVIHIIDFQIAQGSQYIPLIQDLANRPGGPPLLLRITCADDSQSAHARGGGLQIVGQKLAQLCRSKGIPFQFHAAGVSGCEVERGNLIMNPGEALAVNFPYALHHMPDESVSTHNHRDRLLRLVKSLSPKIVTIVEQESNTNTSPFLLRFKETLNFYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELHRKWIMRMNMAGFTQYPMSSSVTGAVKNLLREFNENYRLQEASGVLYIGWKNRAIAATSAWR 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3639979 3643348 + Sed0016517.2 Sed10g0564 727068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0564 547 ProSiteProfiles GRAS family profile. 167 547 IPR005202 -
Sed10g0564 547 Pfam GRAS domain family 177 547 IPR005202 -
Sed10g0564 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 131 546 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0564 Sed-Chr10:3639979 Sed14g1298 Sed-Chr14:21901574 8.20E-250 dispersed
Sed10g0563 Sed-Chr10:3639979 Sed10g0564 Sed-Chr10:3639979 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39716 PF03514 GRAS 1.30E-120 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0564 K27748 - csv:101207883 904.434