Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0574 ATGGCGACATCGTGTTTTGGTTCACTTTGCATGCGCAAATCAAAGAGCAAGCTCTTATCAATACCTTCTTCATTGAAATCCCAGATGAATTCTGATATGGAAAATATGGAGAGGAGAAGGTTTGACAGTTTGGAATCGTGGTCGATGATCCTAGAGTCTGAAAATGTGGAAACTTGGGAGACATCAAAGGAGGATCAGGAGGAGTGGACAGCTGACCTATCTCAGCTCTTCATCGGCAACAAATTCGCCTCCGGTGCTCACAGCCGGATATACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGAATTCCAACCCAAAAGGAGGAAACAAGAGCCAAACTTGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCAAACATAGTTCAGTTCATTGCAGCATGTAAAAAGCCACCTGTATACTGCATAATAACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCGACAGAAACAATACTGAGGTTAGCTCTAGACATATCAAGAGGAATGGAATACCTTCATTCACAAGGAGTAATCCATAGAGACCTCAAATCAAACAACTTGCTTCTAAACGATGAGATGCGAGTAAAAGTAGCAGATTTTGGAACCTCCTGCCTCGAAACGCAGTGTCAAGAATCGAAAGGGAACATGGGAACTTACAGATGGATGGCGCCGGAGATGATTAAAGAGAAGCCTTACACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTCACCACATCTCTGCTTCCCTTTCAAGGGATGACTCCCGTGCAGGCTGCCTTTGCAGTCGCAGAAAAGAATGAGAGGCCGCCATTGCCGGCGAGTTGTCAGCCAGCTCTAGGCCACCTGATAAAGCGATGTTGGGCGGCGAATCCGTCGAGGCGGCCGGATTTCAGCGACATTGTGGCGGCGTTGGAGAAATACGACGAGTGCGTGAAAGAGGGCCTTCCACTTGCACACCACAGAAGATTGGTGGATCGAAGCGCCATTATTGAACGCTTCAAAGCTTGCGCCTCAACCAGCTCTTCAATACCTGTACATGCCTGA 1122 46.79 MATSCFGSLCMRKSKSKLLSIPSSLKSQMNSDMENMERRRFDSLESWSMILESENVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCQESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTSLLPFQGMTPVQAAFAVAEKNERPPLPASCQPALGHLIKRCWAANPSRRPDFSDIVAALEKYDECVKEGLPLAHHRRLVDRSAIIERFKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3747070 3750635 - Sed0013456.1 Sed10g0574 727078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0574 373 PANTHER SERINE-THREONINE PROTEIN KINASE 62 331 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed10g0574 373 CDD STKc_MAP3K-like 83 330 - -
Sed10g0574 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Sed10g0574 373 SMART serkin_6 76 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0574 373 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Sed10g0574 373 Pfam Protein tyrosine and serine/threonine kinase 79 330 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0574 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0574 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0574 373 Gene3D Transferase(Phosphotransferase) domain 1 159 348 - -
Sed10g0574 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0574 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0574 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0574 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0574 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0574 373 SUPERFAMILY Protein kinase-like (PK-like) 51 330 IPR011009 -
Sed10g0574 373 FunFam serine/threonine-protein kinase HT1 159 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0574 Sed-Chr10:3747070 Sed14g1315 Sed-Chr14:22010268 1.00E-155 dispersed
Sed10g0574 Sed-Chr10:3747070 Sed14g1314 Sed-Chr14:22010268 2.20E-198 wgd
Sed10g0574 Sed-Chr10:3747070 Sed08g2387 Sed-Chr8:37060217 2.50E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79825 PF07714 PK_Tyr_Ser-Thr 1.40E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0574 - - - 0.0