Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0582 ATGGATGGTTGTGGTGGAAGTTCTTGTTCTTCAGGTATGATGAATCATTTTGGAGATCAAATAAATAATGGGTTATCTTCCATGATGATGATGATGCCTTTATTGTCCTCCTCTCACAACAACTCCAATGGAGATCAAGATCATTCATGCAATCATCCATTGTTTCCTCTTCCCCCCAATTACACCAATAATTCCCATTCTAACCCTATTTGTTACTTCATGAATGAGGCTAATAATGCCAATTCCTCCTCCTCTTCTTCTTCTTCAAATGAACTCAAAGCTAAAATCATGTCCCATCCTCACTACCATCGCCTCCTCAACGCCTATGTCAATTGTCGTAAGGTCGGGGCGCCACCGGAAGCGGTGGCGAGGCTCGAGGAGGTGTGTGCAACGGCAGCGGCGATGAGCGGAACGTCAACGGGGTGTGTTGGGGAAGATCCGGCGCTTGATCAGTTCATGGAGGCTTATTGTGAGATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAAAGGATTGAGTCCCAGTTCAAAGCCCTCTCTTTGTCCTCTGATGCTGCTAGTGGCGAAGCATTTGATAGGAATGGATCATCGGAAGATGAAGTCGATATCAATGGCCACTCCATCGACCCCCAAGCCGAAGACCGTGAACTGAAAGGTCAGCTGCTCCGCAAGTACAGCGGATACTTGGGCAGTCTCAAGCAAGAATTCATGAAGAAGAGGAAGAAAGGGAAGCTGCCTAAGGAGGCCAGACAACAGCTCCTTGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCCCAGAAGCTAGCTTTAGCTCAATCAACAGGGTTAGATCAAAAGCAAATCAACAATTGGTTTATCAACCAAAGAAAGAGACATTGGAATCCATCAGAAGACATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACCATGTCTTGGGAAATCCTTTTCCCTTGGATATCTCTCACACTCTACTCTAA 1032 45.16 MDGCGGSSCSSGMMNHFGDQINNGLSSMMMMMPLLSSSHNNSNGDQDHSCNHPLFPLPPNYTNNSHSNPICYFMNEANNANSSSSSSSSNELKAKIMSHPHYHRLLNAYVNCRKVGAPPEAVARLEEVCATAAAMSGTSTGCVGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIESQFKALSLSSDAASGEAFDRNGSSEDEVDINGHSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWNPSEDMQFVVMDAAHPQYYMDHVLGNPFPLDISHTLL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3858229 3863535 + Sed0006486.1 Sed10g0582 727086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0582 343 MobiDBLite consensus disorder prediction 197 219 - -
Sed10g0582 343 SMART KNOX2_2 139 190 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed10g0582 343 Pfam Homeobox KN domain 265 304 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed10g0582 343 CDD homeodomain 257 309 IPR001356 GO:0003677(InterPro)
Sed10g0582 343 Pfam ELK domain 225 246 IPR005539 GO:0003677(InterPro)
Sed10g0582 343 MobiDBLite consensus disorder prediction 202 219 - -
Sed10g0582 343 ProSiteProfiles ELK domain profile. 225 245 IPR005539 GO:0003677(InterPro)
Sed10g0582 343 Pfam KNOX2 domain 142 188 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed10g0582 343 SMART HOX_1 247 312 IPR001356 GO:0003677(InterPro)
Sed10g0582 343 Gene3D - 243 314 - -
Sed10g0582 343 FunFam Homeobox protein knotted-1-like 2 250 312 - -
Sed10g0582 343 SMART KNOX1_2 90 134 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed10g0582 343 SMART ELK_2 225 246 IPR005539 GO:0003677(InterPro)
Sed10g0582 343 SUPERFAMILY Homeodomain-like 247 321 IPR009057 -
Sed10g0582 343 ProSiteProfiles 'Homeobox' domain profile. 245 308 IPR001356 GO:0003677(InterPro)
Sed10g0582 343 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 315 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed10g0582 343 Pfam KNOX1 domain 92 130 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2046 Sed-Chr5:33703826 Sed10g0582 Sed-Chr10:3858229 1.20E-99 dispersed
Sed10g0582 Sed-Chr10:3858229 Sed13g1842 Sed-Chr13:23357092 1.60E-73 dispersed
Sed10g0582 Sed-Chr10:3858229 Sed14g1325 Sed-Chr14:22133290 1.10E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39718 PF03791 KNOX2 7.70E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0582 - - - 0.0