Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0588 ATGGCTTTTCTATTCCTCTTCTTCCTAGCCACAATCATCAACCCTTCCCATTCCACGCCCTACCCAAACAAGAGACTAACGCGCAATCCCATCGATGCATGTTGGCGCGCCAACCCCAACTGGGCAGCCAACCGTCGCGCCCTAGCCGACTGTGCAGCCGGTTTCGGCAAAGACGCAATAGGAGGCAAATTTGGGTCAATCTACGTGGTCACTGACCCGTCAGACGACCCCGAAAATCCAAAGCACGGAACCCTACGGTTCGGGGCGATCCAACCGCAGCCGTTGTGGATCGTGTTTGCAAGGAGCATGGTGATCACGCCGAAAAGAGAGCTGATGGTGAACAGCTACAAGACGATAGACGGGCGAGGAGCCAAGGTGGAGATTGCTTATGGCGCGTGCTTAACGATTCACAACGTGAGCCATGTGATTGTTCATGGGATCAGCATTCATGATTGTAAGCCTGGCAAGCCTGGGCTCGTGCGAAGCAGCCCTGACCATTGCGGCGAGCGGCAATGGTCCGATGGCGACGCCATTTCTATATTTAGCTCTACCCATGTTTGGATTGACCATTGCTATTTGGCTCGTTGCACTGATGGGCTCATTGATGTCATTCATGCTTCCAATGCTGTCACCATTTCCAACAATTACTTAACTCAACATGACAAAGTGATCCTTCTTGGGCATAATGATGACTTTACAGCTGATAGAAATATGAGAGTTACTGTAGCATTCAATCGTTTTGGCGCTGGGCTTGTTCAAAGAATGCCCAGGGTGAGACATGGGTATGCGCACGTTGCCAATAATTGGTACAACAAGTGGGAAATGTATGCTATGGGTGGCAGTGCCAATCCAACCATTTTCAGTCAAGGAAACTACTTCATAGCTCCTGATGAACAATGCTCCAAGCAGGTTACAAAGAGAGAGGTTTATGAGAGTGGATGGAGAAAATGGAAATGGAGGTCTTCAAATGATGTGTTTTTGAATGGTGCCTATTTTATCCCATCCGGTTGGGGAATTTGTGCGCCACTCTACACTCGGGCTCAAGCTTTTCGCGTGGCTCATGGCTCTATGGTTCCACTCTTGACCATCGCTGCTGGCCCTTTGACTTGTACTCTTGGTCAGCCTTGTTGA 1131 49.69 MAFLFLFFLATIINPSHSTPYPNKRLTRNPIDACWRANPNWAANRRALADCAAGFGKDAIGGKFGSIYVVTDPSDDPENPKHGTLRFGAIQPQPLWIVFARSMVITPKRELMVNSYKTIDGRGAKVEIAYGACLTIHNVSHVIVHGISIHDCKPGKPGLVRSSPDHCGERQWSDGDAISIFSSTHVWIDHCYLARCTDGLIDVIHASNAVTISNNYLTQHDKVILLGHNDDFTADRNMRVTVAFNRFGAGLVQRMPRVRHGYAHVANNWYNKWEMYAMGGSANPTIFSQGNYFIAPDEQCSKQVTKREVYESGWRKWKWRSSNDVFLNGAYFIPSGWGICAPLYTRAQAFRVAHGSMVPLLTIAAGPLTCTLGQPC 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3888184 3892418 + Sed0020562.1 Sed10g0588 727092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0588 376 SMART amb_all 102 299 IPR002022 -
Sed10g0588 376 PANTHER PECTATE LYASE 18-RELATED 8 373 IPR045032 GO:0030570(InterPro)
Sed10g0588 376 Pfam Pectate lyase 109 293 IPR002022 -
Sed10g0588 376 PRINTS Pollen allergen Amb family signature 110 126 IPR018082 -
Sed10g0588 376 PRINTS Pollen allergen Amb family signature 51 68 IPR018082 -
Sed10g0588 376 PRINTS Pollen allergen Amb family signature 174 195 IPR018082 -
Sed10g0588 376 PRINTS Pollen allergen Amb family signature 347 370 IPR018082 -
Sed10g0588 376 PRINTS Pollen allergen Amb family signature 254 273 IPR018082 -
Sed10g0588 376 PRINTS Pollen allergen Amb family signature 74 99 IPR018082 -
Sed10g0588 376 PRINTS Pollen allergen Amb family signature 317 341 IPR018082 -
Sed10g0588 376 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Sed10g0588 376 SUPERFAMILY Pectin lyase-like 29 366 IPR011050 -
Sed10g0588 376 Gene3D - 28 369 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0588 Sed-Chr10:3888184 Sed11g1880 Sed-Chr11:33382568 6.20E-124 dispersed
Sed01g1503 Sed-Chr1:10901077 Sed10g0588 Sed-Chr10:3888184 8.40E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0588 K01728 - csv:101210816 625.55