Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0588 | ATGGCTTTTCTATTCCTCTTCTTCCTAGCCACAATCATCAACCCTTCCCATTCCACGCCCTACCCAAACAAGAGACTAACGCGCAATCCCATCGATGCATGTTGGCGCGCCAACCCCAACTGGGCAGCCAACCGTCGCGCCCTAGCCGACTGTGCAGCCGGTTTCGGCAAAGACGCAATAGGAGGCAAATTTGGGTCAATCTACGTGGTCACTGACCCGTCAGACGACCCCGAAAATCCAAAGCACGGAACCCTACGGTTCGGGGCGATCCAACCGCAGCCGTTGTGGATCGTGTTTGCAAGGAGCATGGTGATCACGCCGAAAAGAGAGCTGATGGTGAACAGCTACAAGACGATAGACGGGCGAGGAGCCAAGGTGGAGATTGCTTATGGCGCGTGCTTAACGATTCACAACGTGAGCCATGTGATTGTTCATGGGATCAGCATTCATGATTGTAAGCCTGGCAAGCCTGGGCTCGTGCGAAGCAGCCCTGACCATTGCGGCGAGCGGCAATGGTCCGATGGCGACGCCATTTCTATATTTAGCTCTACCCATGTTTGGATTGACCATTGCTATTTGGCTCGTTGCACTGATGGGCTCATTGATGTCATTCATGCTTCCAATGCTGTCACCATTTCCAACAATTACTTAACTCAACATGACAAAGTGATCCTTCTTGGGCATAATGATGACTTTACAGCTGATAGAAATATGAGAGTTACTGTAGCATTCAATCGTTTTGGCGCTGGGCTTGTTCAAAGAATGCCCAGGGTGAGACATGGGTATGCGCACGTTGCCAATAATTGGTACAACAAGTGGGAAATGTATGCTATGGGTGGCAGTGCCAATCCAACCATTTTCAGTCAAGGAAACTACTTCATAGCTCCTGATGAACAATGCTCCAAGCAGGTTACAAAGAGAGAGGTTTATGAGAGTGGATGGAGAAAATGGAAATGGAGGTCTTCAAATGATGTGTTTTTGAATGGTGCCTATTTTATCCCATCCGGTTGGGGAATTTGTGCGCCACTCTACACTCGGGCTCAAGCTTTTCGCGTGGCTCATGGCTCTATGGTTCCACTCTTGACCATCGCTGCTGGCCCTTTGACTTGTACTCTTGGTCAGCCTTGTTGA | 1131 | 49.69 | MAFLFLFFLATIINPSHSTPYPNKRLTRNPIDACWRANPNWAANRRALADCAAGFGKDAIGGKFGSIYVVTDPSDDPENPKHGTLRFGAIQPQPLWIVFARSMVITPKRELMVNSYKTIDGRGAKVEIAYGACLTIHNVSHVIVHGISIHDCKPGKPGLVRSSPDHCGERQWSDGDAISIFSSTHVWIDHCYLARCTDGLIDVIHASNAVTISNNYLTQHDKVILLGHNDDFTADRNMRVTVAFNRFGAGLVQRMPRVRHGYAHVANNWYNKWEMYAMGGSANPTIFSQGNYFIAPDEQCSKQVTKREVYESGWRKWKWRSSNDVFLNGAYFIPSGWGICAPLYTRAQAFRVAHGSMVPLLTIAAGPLTCTLGQPC | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3888184 | 3892418 | + | Sed0020562.1 | Sed10g0588 | 727092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0588 | 376 | SMART | amb_all | 102 | 299 | IPR002022 | - | |
Sed10g0588 | 376 | PANTHER | PECTATE LYASE 18-RELATED | 8 | 373 | IPR045032 | GO:0030570(InterPro) | |
Sed10g0588 | 376 | Pfam | Pectate lyase | 109 | 293 | IPR002022 | - | |
Sed10g0588 | 376 | PRINTS | Pollen allergen Amb family signature | 110 | 126 | IPR018082 | - | |
Sed10g0588 | 376 | PRINTS | Pollen allergen Amb family signature | 51 | 68 | IPR018082 | - | |
Sed10g0588 | 376 | PRINTS | Pollen allergen Amb family signature | 174 | 195 | IPR018082 | - | |
Sed10g0588 | 376 | PRINTS | Pollen allergen Amb family signature | 347 | 370 | IPR018082 | - | |
Sed10g0588 | 376 | PRINTS | Pollen allergen Amb family signature | 254 | 273 | IPR018082 | - | |
Sed10g0588 | 376 | PRINTS | Pollen allergen Amb family signature | 74 | 99 | IPR018082 | - | |
Sed10g0588 | 376 | PRINTS | Pollen allergen Amb family signature | 317 | 341 | IPR018082 | - | |
Sed10g0588 | 376 | PRINTS | Pollen allergen Amb family signature | 276 | 295 | IPR018082 | - | |
Sed10g0588 | 376 | SUPERFAMILY | Pectin lyase-like | 29 | 366 | IPR011050 | - | |
Sed10g0588 | 376 | Gene3D | - | 28 | 369 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0588 | Sed-Chr10:3888184 | Sed11g1880 | Sed-Chr11:33382568 | 6.20E-124 | dispersed | |
Sed01g1503 | Sed-Chr1:10901077 | Sed10g0588 | Sed-Chr10:3888184 | 8.40E-161 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0588 | K01728 | - | csv:101210816 | 625.55 |