Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0589 | ATGGACAAAGGATGGGGTTTGACCCTTCATGATTCCGATCACTCCATTGGGTTTTTCTCAGCCAAGCCGCCGCCCTCCACCACCGTCAATTCCTTCCAGAGAATGTTTCAAAAAGTTGAACTTTCCGGCAACGCCTCCGCTCCGCCGCCGTCCGATCAGAATCGGTTGGCCGTTAACGAGGTTGACTTTTTCTCCAATAAAATCAGGGAGGAACAAGAGTTCAAACCACCGCCGGTCAATGCTGTGAAAGACGAAAAGAATTCGATTATTGCTCCCAGAACTGAATTAAATCTTGTGAATACTGGTTTGCGATTGTTAACTGCTAATACCGGAAGCGATCAATCAACCGTGGATGATGGGATTTCATCCGATCCCGATGATAAACGAGCCAAAAACGAGCTAGTGCAGCTCCAAGTGGAGCTTCAACGTATGAACGCAGAGAATCACAAGCTTAGAGACATGCTAAGCCATGTGAACAACAACTACAGTACCCTACAAATGCATCTTTTGACATTAATGCATCAACAACACCAAAATCAAGCCTCGGAACCCACTCAAGAACGAGAGATCGAGGAGAAAAAAGAAGATGAAGTTGAAAAGATGGTAGTAGCGAGGCAATTTATGGATGTAGGACGAACGAGAGGTGAAAGCGATGCGCTATGCAATTCGTCGTGCGATGAAAGAACTGGTTCTGGATCTCCATCAAAAAAGAGCAGTGGAAGCTGCAAGGATATTCAAGACATGGATCAGGAGAATAATGATAATAATAATAATTTGGGGAAATTAAGATCATCCAATAATGATAGTATCCCTAGAGAAGAAAGCCCAGAATCAGAATCTCAGGGTTGGGGTCCTAACAAAGTTCCTAGAATATTGGACTCTTCTCCTAAACCACTTGAGCAATCCACAGAAGCTACCATGAGAAAAGCCCGTGTCTCGGTTCGAGCCAGATCAGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATACGGGCAAAAAATGGCGAAAGGAAATCCATGTCCACGGGCTTATTATCGTTGCACAATGGCAGTTGGTTGTCCCGTACGGAAACAAGTTCAAAGATGCGCCGAAGACCGGAGTATATTAATAACAACCTACGAAGGCAACCATAACCACCCGCTTCCGCCGACGGCGATGGCGATGGCGTCGACGACCACGGCGGCGGCTAGCATGTTGTTGTCAGGGTCCATGTCAAGCACGGACCACAACAACAACAATCTAATGAACCCAAATTTACTGGCTCGAGCCATTTTCCCATGTTCCTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACACTAGACCTCACTCAACGGCCGGCGCCGCCGCCGTTCCACCTCCCCTACGCCGCCGCCCAACCGCCGTCTGCCACGCTGTACAATCAGTCCAAATTCTCTGGGTTACAGCTGTCGCATGACGTGGGGGTTAATGGCAATTTACCTCATTTGGGTCACCACCCAATTACACAGCTGGCACCGCCTCCGCTCCAGCCTGGCGGTGCTCCCAACTCTTTCGCCGATCCGTTGACGTTGAGTGCCGCCACCGCCGCTATCACCGCCGATCCCAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCTTTATCGGCGGAGCTCATTCCAATAACAATAACAACAATTCCACAAACAATACCTCTACGTCAAATAACGGAAACAACAACAGCAAAATTACCAATTTCCCTGGAAATTAA | 1752 | 48.29 | MDKGWGLTLHDSDHSIGFFSAKPPPSTTVNSFQRMFQKVELSGNASAPPPSDQNRLAVNEVDFFSNKIREEQEFKPPPVNAVKDEKNSIIAPRTELNLVNTGLRLLTANTGSDQSTVDDGISSDPDDKRAKNELVQLQVELQRMNAENHKLRDMLSHVNNNYSTLQMHLLTLMHQQHQNQASEPTQEREIEEKKEDEVEKMVVARQFMDVGRTRGESDALCNSSCDERTGSGSPSKKSSGSCKDIQDMDQENNDNNNNLGKLRSSNNDSIPREESPESESQGWGPNKVPRILDSSPKPLEQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPTAMAMASTTTAAASMLLSGSMSSTDHNNNNLMNPNLLARAIFPCSSSMATISASAPFPTITLDLTQRPAPPPFHLPYAAAQPPSATLYNQSKFSGLQLSHDVGVNGNLPHLGHHPITQLAPPPLQPGGAPNSFADPLTLSAATAAITADPNFTAALAAAISSFIGGAHSNNNNNNSTNNTSTSNNGNNNSKITNFPGN | 583 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3914059 | 3917902 | + | Sed0003565.1 | Sed10g0589 | 727093 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0589 | 583 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 118 | 556 | IPR044810 | GO:0003700(InterPro) | |
Sed10g0589 | 583 | MobiDBLite | consensus disorder prediction | 217 | 241 | - | - | |
Sed10g0589 | 583 | MobiDBLite | consensus disorder prediction | 213 | 306 | - | - | |
Sed10g0589 | 583 | MobiDBLite | consensus disorder prediction | 251 | 266 | - | - | |
Sed10g0589 | 583 | ProSiteProfiles | WRKY domain profile. | 318 | 384 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g0589 | 583 | MobiDBLite | consensus disorder prediction | 556 | 583 | - | - | |
Sed10g0589 | 583 | Gene3D | WRKY domain | 308 | 385 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g0589 | 583 | Pfam | WRKY DNA -binding domain | 325 | 382 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g0589 | 583 | Coils | Coil | 127 | 161 | - | - | |
Sed10g0589 | 583 | MobiDBLite | consensus disorder prediction | 175 | 197 | - | - | |
Sed10g0589 | 583 | SUPERFAMILY | WRKY DNA-binding domain | 316 | 384 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g0589 | 583 | SMART | WRKY_cls | 323 | 383 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g0589 | 583 | FunFam | probable WRKY transcription factor 31 | 308 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2033 | Sed-Chr5:33571348 | Sed10g0589 | Sed-Chr10:3914059 | 1.30E-87 | dispersed | |
Sed10g0589 | Sed-Chr10:3914059 | Sed12g1936 | Sed-Chr12:30465888 | 7.10E-42 | dispersed | |
Sed10g0589 | Sed-Chr10:3914059 | Sed14g1331 | Sed-Chr14:22164728 | 1.60E-158 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39719 | PF03106 | WRKY | 3.30E-24 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0589 | - | - | - | 0.0 |