Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0589 ATGGACAAAGGATGGGGTTTGACCCTTCATGATTCCGATCACTCCATTGGGTTTTTCTCAGCCAAGCCGCCGCCCTCCACCACCGTCAATTCCTTCCAGAGAATGTTTCAAAAAGTTGAACTTTCCGGCAACGCCTCCGCTCCGCCGCCGTCCGATCAGAATCGGTTGGCCGTTAACGAGGTTGACTTTTTCTCCAATAAAATCAGGGAGGAACAAGAGTTCAAACCACCGCCGGTCAATGCTGTGAAAGACGAAAAGAATTCGATTATTGCTCCCAGAACTGAATTAAATCTTGTGAATACTGGTTTGCGATTGTTAACTGCTAATACCGGAAGCGATCAATCAACCGTGGATGATGGGATTTCATCCGATCCCGATGATAAACGAGCCAAAAACGAGCTAGTGCAGCTCCAAGTGGAGCTTCAACGTATGAACGCAGAGAATCACAAGCTTAGAGACATGCTAAGCCATGTGAACAACAACTACAGTACCCTACAAATGCATCTTTTGACATTAATGCATCAACAACACCAAAATCAAGCCTCGGAACCCACTCAAGAACGAGAGATCGAGGAGAAAAAAGAAGATGAAGTTGAAAAGATGGTAGTAGCGAGGCAATTTATGGATGTAGGACGAACGAGAGGTGAAAGCGATGCGCTATGCAATTCGTCGTGCGATGAAAGAACTGGTTCTGGATCTCCATCAAAAAAGAGCAGTGGAAGCTGCAAGGATATTCAAGACATGGATCAGGAGAATAATGATAATAATAATAATTTGGGGAAATTAAGATCATCCAATAATGATAGTATCCCTAGAGAAGAAAGCCCAGAATCAGAATCTCAGGGTTGGGGTCCTAACAAAGTTCCTAGAATATTGGACTCTTCTCCTAAACCACTTGAGCAATCCACAGAAGCTACCATGAGAAAAGCCCGTGTCTCGGTTCGAGCCAGATCAGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATACGGGCAAAAAATGGCGAAAGGAAATCCATGTCCACGGGCTTATTATCGTTGCACAATGGCAGTTGGTTGTCCCGTACGGAAACAAGTTCAAAGATGCGCCGAAGACCGGAGTATATTAATAACAACCTACGAAGGCAACCATAACCACCCGCTTCCGCCGACGGCGATGGCGATGGCGTCGACGACCACGGCGGCGGCTAGCATGTTGTTGTCAGGGTCCATGTCAAGCACGGACCACAACAACAACAATCTAATGAACCCAAATTTACTGGCTCGAGCCATTTTCCCATGTTCCTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACACTAGACCTCACTCAACGGCCGGCGCCGCCGCCGTTCCACCTCCCCTACGCCGCCGCCCAACCGCCGTCTGCCACGCTGTACAATCAGTCCAAATTCTCTGGGTTACAGCTGTCGCATGACGTGGGGGTTAATGGCAATTTACCTCATTTGGGTCACCACCCAATTACACAGCTGGCACCGCCTCCGCTCCAGCCTGGCGGTGCTCCCAACTCTTTCGCCGATCCGTTGACGTTGAGTGCCGCCACCGCCGCTATCACCGCCGATCCCAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCTTTATCGGCGGAGCTCATTCCAATAACAATAACAACAATTCCACAAACAATACCTCTACGTCAAATAACGGAAACAACAACAGCAAAATTACCAATTTCCCTGGAAATTAA 1752 48.29 MDKGWGLTLHDSDHSIGFFSAKPPPSTTVNSFQRMFQKVELSGNASAPPPSDQNRLAVNEVDFFSNKIREEQEFKPPPVNAVKDEKNSIIAPRTELNLVNTGLRLLTANTGSDQSTVDDGISSDPDDKRAKNELVQLQVELQRMNAENHKLRDMLSHVNNNYSTLQMHLLTLMHQQHQNQASEPTQEREIEEKKEDEVEKMVVARQFMDVGRTRGESDALCNSSCDERTGSGSPSKKSSGSCKDIQDMDQENNDNNNNLGKLRSSNNDSIPREESPESESQGWGPNKVPRILDSSPKPLEQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPTAMAMASTTTAAASMLLSGSMSSTDHNNNNLMNPNLLARAIFPCSSSMATISASAPFPTITLDLTQRPAPPPFHLPYAAAQPPSATLYNQSKFSGLQLSHDVGVNGNLPHLGHHPITQLAPPPLQPGGAPNSFADPLTLSAATAAITADPNFTAALAAAISSFIGGAHSNNNNNNSTNNTSTSNNGNNNSKITNFPGN 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3914059 3917902 + Sed0003565.1 Sed10g0589 727093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0589 583 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 118 556 IPR044810 GO:0003700(InterPro)
Sed10g0589 583 MobiDBLite consensus disorder prediction 217 241 - -
Sed10g0589 583 MobiDBLite consensus disorder prediction 213 306 - -
Sed10g0589 583 MobiDBLite consensus disorder prediction 251 266 - -
Sed10g0589 583 ProSiteProfiles WRKY domain profile. 318 384 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0589 583 MobiDBLite consensus disorder prediction 556 583 - -
Sed10g0589 583 Gene3D WRKY domain 308 385 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0589 583 Pfam WRKY DNA -binding domain 325 382 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0589 583 Coils Coil 127 161 - -
Sed10g0589 583 MobiDBLite consensus disorder prediction 175 197 - -
Sed10g0589 583 SUPERFAMILY WRKY DNA-binding domain 316 384 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0589 583 SMART WRKY_cls 323 383 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0589 583 FunFam probable WRKY transcription factor 31 308 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2033 Sed-Chr5:33571348 Sed10g0589 Sed-Chr10:3914059 1.30E-87 dispersed
Sed10g0589 Sed-Chr10:3914059 Sed12g1936 Sed-Chr12:30465888 7.10E-42 dispersed
Sed10g0589 Sed-Chr10:3914059 Sed14g1331 Sed-Chr14:22164728 1.60E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39719 PF03106 WRKY 3.30E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0589 - - - 0.0