Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0591 ATGGAGTGGACGAGAGGCAGGACAATCGGCCGCGGCTCCTCCGCCGTGGTCTCCGCCGCAACGGACCGCCGGTCCGGCCAACTGCTGGCGGTTAAATCGGTTGTGTTCCCAAATTCCGATTTTCTCATGAAGGAACAGAGGATTCTTTCTCGGTTGAATTGTCCGCGTGTTGTAGCTTATAAGGGATTTGACGTCACGTTCGAAAATGGGAATTTGATGTTCAATCTTTTAATGGAGTTTGCGCTTGGTGGGTCGATTTTAGATGCGATGGCGGCCGCCGGCGGCAAATTAGATGAGGCGACGGCGCAATTGTATACTCGAGAGATTTTAATTGGGCTTGAGTATGTTCATTCTAATGGTTTAGTGCATTGCGACATTAAATGTTGTAATGTTTTGATCGGTGAAGATGGGATTAAGATTGCGGATTTCGGCTGCGCGCGGCGGGTGGAGGAGGTTTCCGGTGGGAATTTCGCCGGAACGCCGGTGTTCATGGCGCCGGAGGTGGCGCGTGGGGAAAAACAGGGGTTTGAAGCTGATGTTTGGGCAGTGGGGTGTATGGTGATTCAGATGGTGACCGGCCGAGCTCCGTGGGCAGACGTGTCGGATCCGGTGGCTGCCATTTACAGAATTGGGTACGGTAACGACTCGCCGGAGATTCCGAGGTTCATGTCGGAGCAGGGCAAGGACTTTCTCCGGCGGTGTTTGATCAGAAACCCAGATGAACGGTGGTCGGTTAGTGAGCTTTTAAAACACCCTTTTGTTCATGAGTTGAAATTTCATCATCCAAAACAGATTTCAGTAACTCCGACGAGTATCTTGGAACAAGGATTATGGGAAACAGTTCAAAGTCCGATCAGACCAAAAATTTACAAAACTCCATTGCAGAGGATTCAGCAACTGAGTGAAGAGTCCAAATTTGAGTCTTTTGGAACACCCAATTGGGAGAGCAATGAAGATTGGGTAACAGTGAGAAGCAAGGACAGAGAAAAAAGCAATTTGGTGTCTGTATTGGAGCTGCCCTGTTCTTCTGAATCCATGGAAATGGCAACTAAAATTGGAGCTGTTGATCAGAATTATTTTAGTATTAGTATTAGTAGAAGCAGTGATTATTGTAGTAAAAAAAGCAGTAATGCTAAGAAAAGGGACTTGCCTATATCCTCTGTTAGCAACCAGATTGTAACATTGAACACTGTCATTTCTTTGTTTCTTGTTTTTCCACCTGGCAGTTGGTTTGTTTGTCTTATGTTTTTGAGGTATAATGAATATATTTTGATTTATCAAATTATGGTAAGCTTGAAGTCCATCTCCATTAATGATACTTGCCTATGCCTAGTTTGA 1338 45.67 MEWTRGRTIGRGSSAVVSAATDRRSGQLLAVKSVVFPNSDFLMKEQRILSRLNCPRVVAYKGFDVTFENGNLMFNLLMEFALGGSILDAMAAAGGKLDEATAQLYTREILIGLEYVHSNGLVHCDIKCCNVLIGEDGIKIADFGCARRVEEVSGGNFAGTPVFMAPEVARGEKQGFEADVWAVGCMVIQMVTGRAPWADVSDPVAAIYRIGYGNDSPEIPRFMSEQGKDFLRRCLIRNPDERWSVSELLKHPFVHELKFHHPKQISVTPTSILEQGLWETVQSPIRPKIYKTPLQRIQQLSEESKFESFGTPNWESNEDWVTVRSKDREKSNLVSVLELPCSSESMEMATKIGAVDQNYFSISISRSSDYCSKKSSNAKKRDLPISSVSNQIVTLNTVISLFLVFPPGSWFVCLMFLRYNEYILIYQIMVSLKSISINDTCLCLV 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3934828 3936266 + Sed0000419.1 Sed10g0591 727095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0591 445 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Sed10g0591 445 CDD STKc_MAPKKK 2 254 - -
Sed10g0591 445 SMART serkin_6 3 254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0591 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0591 445 Pfam Protein kinase domain 4 254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0591 445 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 255 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed10g0591 445 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0591 445 SUPERFAMILY Protein kinase-like (PK-like) 3 297 IPR011009 -
Sed10g0591 445 Gene3D Transferase(Phosphotransferase) domain 1 2 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3280 Sed-Chr4:43183469 Sed10g0591 Sed-Chr10:3934828 1.10E-83 dispersed
Sed05g0913 Sed-Chr5:7282013 Sed10g0591 Sed-Chr10:3934828 2.80E-60 dispersed
Sed05g2032 Sed-Chr5:33553953 Sed10g0591 Sed-Chr10:3934828 1.70E-91 dispersed
Sed10g0591 Sed-Chr10:3934828 Sed10g0647 Sed-Chr10:4405625 1.50E-55 dispersed
Sed10g0591 Sed-Chr10:3934828 Sed14g1340 Sed-Chr14:22237849 5.40E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79826 PF00069 Pkinase 7.10E-53 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0591 K20716 - csv:101210574 573.163