Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0607 | ATGTGGGTTTGCTCAAAACCTTCTTTTCAGCCTTTAAACCCTCTTCAAATTCCTTCGCGATCGAAATCTGTCGCACCGATCCACTGCGGTCTACGTGAGCTCCGGCAACGAATCGATTCAGTAAAAAACACCCAGAAAATTACAGAGGCCATGAAGCTCGTAGCTGCTGCCAAAGTGCGTAAAGCTCAAGAATCTGTCGTTAATGGAAGACCCTTTTCAGAATCTCTGGTGGGAATTCTTTACGACATCAACGAGCAGCTTCAAATCGAAGATATAGATTTTCCTCTCACAAAAATCCGACCGGTCAAGAAGGTCGGTTTGTTAGTTGTGACAGGAAATCGAGGCCTGTGTGGTAGTTTCAATAACATGATCATCAAAAGGGCAGAATCCAGAATCGCAGAATTGAAAGCTCTTGGACTTGATTATACTGTTATTAGCGTTGGCAAAAAGGGTAATTCTTATTTTCTTCACCGGCCTTACATTCCTGTACTTAGATTTATTGAATGTGGTTCATTTCCTACTGTTAAAGAAGCTCAATCCATTGCTGATTATGTTTTTTCGCTCTTTATAACTGAAGAGGTTGACAAAATTGAGCTTGTGTACACTAAATTTGTGTCATTGGTTAAATCCAACCCTGTCATCCAGACTTTGCTTCCATTGTCACCTAAAGGAGAGATTTGTGACGTGAATGGTGTTTGTGTCGATGCCGATGAGGATGAGTTCTTTCGATTGACGACGAAAGAAGGGAAATTGATTGTTGAGAGAGATGGGGTGAGGGTAAAAGCCTCAGGTTTCTCCCCAATTTTGGAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTGTTGCCTCTCTATTTGAACAGCCAAATTTTGAGGTCATTGCAGGAGTCATTGGCCAGTGAACTTGCAGCTAGAATGTGTGCTATGAGCAATGCAACTGATAATGCAAGCGAGTTGAAGAAGATGTACTCTATTGTCTATAACCGACAGCGCCAAGCCAAAATTACTGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTGGATTGA | 1056 | 42.33 | MWVCSKPSFQPLNPLQIPSRSKSVAPIHCGLRELRQRIDSVKNTQKITEAMKLVAAAKVRKAQESVVNGRPFSESLVGILYDINEQLQIEDIDFPLTKIRPVKKVGLLVVTGNRGLCGSFNNMIIKRAESRIAELKALGLDYTVISVGKKGNSYFLHRPYIPVLRFIECGSFPTVKEAQSIADYVFSLFITEEVDKIELVYTKFVSLVKSNPVIQTLLPLSPKGEICDVNGVCVDADEDEFFRLTTKEGKLIVERDGVRVKASGFSPILEFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMCAMSNATDNASELKKMYSIVYNRQRQAKITGEILEIVAGANALD | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4019792 | 4020847 | - | Sed0013732.1 | Sed10g0607 | 727111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0607 | 351 | Coils | Coil | 31 | 51 | - | - | |
Sed10g0607 | 351 | FunFam | ATP synthase gamma chain, chloroplastic | 29 | 96 | - | - | |
Sed10g0607 | 351 | CDD | F1-ATPase_gamma | 31 | 347 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Sed10g0607 | 351 | FunFam | ATP synthase gamma chain, chloroplastic | 247 | 350 | - | - | |
Sed10g0607 | 351 | Hamap | ATP synthase gamma chain [atpG]. | 28 | 350 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Sed10g0607 | 351 | Pfam | ATP synthase | 31 | 350 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Sed10g0607 | 351 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 21 | 350 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER) | |
Sed10g0607 | 351 | Gene3D | - | 98 | 221 | - | - | |
Sed10g0607 | 351 | PRINTS | ATP synthase gamma subunit signature | 102 | 121 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Sed10g0607 | 351 | PRINTS | ATP synthase gamma subunit signature | 297 | 316 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Sed10g0607 | 351 | PRINTS | ATP synthase gamma subunit signature | 195 | 212 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Sed10g0607 | 351 | PRINTS | ATP synthase gamma subunit signature | 328 | 349 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Sed10g0607 | 351 | ProSitePatterns | ATP synthase gamma subunit signature. | 336 | 349 | IPR023632 | - | |
Sed10g0607 | 351 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 30 | 350 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Sed10g0607 | 351 | FunFam | ATP synthase gamma chain | 95 | 221 | - | - | |
Sed10g0607 | 351 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 260 | 350 | - | - | |
Sed10g0607 | 351 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 29 | 97 | - | - | |
Sed10g0607 | 351 | NCBIfam | ATP synthase F1 subunit gamma | 30 | 350 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2299 | Sed-Chr1:17382831 | Sed10g0607 | Sed-Chr10:4019792 | 2.20E-16 | transposed | |
Sed01g1477 | Sed-Chr1:10793122 | Sed10g0607 | Sed-Chr10:4019792 | 1.90E-141 | wgd | |
Sed10g0607 | Sed-Chr10:4019792 | Sed08g2366 | Sed-Chr8:36924135 | 2.90E-38 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0607 | K02115 | - | csv:101218747 | 575.859 |