Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0607 ATGTGGGTTTGCTCAAAACCTTCTTTTCAGCCTTTAAACCCTCTTCAAATTCCTTCGCGATCGAAATCTGTCGCACCGATCCACTGCGGTCTACGTGAGCTCCGGCAACGAATCGATTCAGTAAAAAACACCCAGAAAATTACAGAGGCCATGAAGCTCGTAGCTGCTGCCAAAGTGCGTAAAGCTCAAGAATCTGTCGTTAATGGAAGACCCTTTTCAGAATCTCTGGTGGGAATTCTTTACGACATCAACGAGCAGCTTCAAATCGAAGATATAGATTTTCCTCTCACAAAAATCCGACCGGTCAAGAAGGTCGGTTTGTTAGTTGTGACAGGAAATCGAGGCCTGTGTGGTAGTTTCAATAACATGATCATCAAAAGGGCAGAATCCAGAATCGCAGAATTGAAAGCTCTTGGACTTGATTATACTGTTATTAGCGTTGGCAAAAAGGGTAATTCTTATTTTCTTCACCGGCCTTACATTCCTGTACTTAGATTTATTGAATGTGGTTCATTTCCTACTGTTAAAGAAGCTCAATCCATTGCTGATTATGTTTTTTCGCTCTTTATAACTGAAGAGGTTGACAAAATTGAGCTTGTGTACACTAAATTTGTGTCATTGGTTAAATCCAACCCTGTCATCCAGACTTTGCTTCCATTGTCACCTAAAGGAGAGATTTGTGACGTGAATGGTGTTTGTGTCGATGCCGATGAGGATGAGTTCTTTCGATTGACGACGAAAGAAGGGAAATTGATTGTTGAGAGAGATGGGGTGAGGGTAAAAGCCTCAGGTTTCTCCCCAATTTTGGAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTGTTGCCTCTCTATTTGAACAGCCAAATTTTGAGGTCATTGCAGGAGTCATTGGCCAGTGAACTTGCAGCTAGAATGTGTGCTATGAGCAATGCAACTGATAATGCAAGCGAGTTGAAGAAGATGTACTCTATTGTCTATAACCGACAGCGCCAAGCCAAAATTACTGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTGGATTGA 1056 42.33 MWVCSKPSFQPLNPLQIPSRSKSVAPIHCGLRELRQRIDSVKNTQKITEAMKLVAAAKVRKAQESVVNGRPFSESLVGILYDINEQLQIEDIDFPLTKIRPVKKVGLLVVTGNRGLCGSFNNMIIKRAESRIAELKALGLDYTVISVGKKGNSYFLHRPYIPVLRFIECGSFPTVKEAQSIADYVFSLFITEEVDKIELVYTKFVSLVKSNPVIQTLLPLSPKGEICDVNGVCVDADEDEFFRLTTKEGKLIVERDGVRVKASGFSPILEFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMCAMSNATDNASELKKMYSIVYNRQRQAKITGEILEIVAGANALD 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4019792 4020847 - Sed0013732.1 Sed10g0607 727111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0607 351 Coils Coil 31 51 - -
Sed10g0607 351 FunFam ATP synthase gamma chain, chloroplastic 29 96 - -
Sed10g0607 351 CDD F1-ATPase_gamma 31 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed10g0607 351 FunFam ATP synthase gamma chain, chloroplastic 247 350 - -
Sed10g0607 351 Hamap ATP synthase gamma chain [atpG]. 28 350 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed10g0607 351 Pfam ATP synthase 31 350 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed10g0607 351 PANTHER ATP SYNTHASE GAMMA CHAIN 21 350 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Sed10g0607 351 Gene3D - 98 221 - -
Sed10g0607 351 PRINTS ATP synthase gamma subunit signature 102 121 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed10g0607 351 PRINTS ATP synthase gamma subunit signature 297 316 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed10g0607 351 PRINTS ATP synthase gamma subunit signature 195 212 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed10g0607 351 PRINTS ATP synthase gamma subunit signature 328 349 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed10g0607 351 ProSitePatterns ATP synthase gamma subunit signature. 336 349 IPR023632 -
Sed10g0607 351 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 30 350 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed10g0607 351 FunFam ATP synthase gamma chain 95 221 - -
Sed10g0607 351 Gene3D ATP synthase, gamma subunit, helix hairpin domain 260 350 - -
Sed10g0607 351 Gene3D ATP synthase, gamma subunit, helix hairpin domain 29 97 - -
Sed10g0607 351 NCBIfam ATP synthase F1 subunit gamma 30 350 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2299 Sed-Chr1:17382831 Sed10g0607 Sed-Chr10:4019792 2.20E-16 transposed
Sed01g1477 Sed-Chr1:10793122 Sed10g0607 Sed-Chr10:4019792 1.90E-141 wgd
Sed10g0607 Sed-Chr10:4019792 Sed08g2366 Sed-Chr8:36924135 2.90E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0607 K02115 - csv:101218747 575.859