Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0612 ATGGGTCGAAAGAAGTCTACCGCACGGGATGATGACAATGCCCCTGCAACAGCTCATGGCGGTGGGAAGTCTAAGAAAAAGACATTTGCAGTAGACGACGATGAGTACTCCTTTGGAACTGAGAGGTCTGAAGAAGCTCCTTCTCAGGAGGAGAAGGTTGTGATAACTGGGAAAAAGAAGGGTAAGAAGGGCAATTCAAAAGCTTCACAAGTTGAGGAGGAGGATGTTGATGATGGAGACGGTGTTTCAGAAATTGTTATCACCGAGAAGAAGGGTAAGTCGAAGAAGGGTGGTGGTAGCAGTGCTTTTACTGCTTCCAGTTTTGATTTTCTTGAGGAAGGAGAGGATGGTGTTGATAATGGTGATGATGAATCTGTGTTAACTACAGAAAGGGATGACAATGAAGCAGATGATTTTGCAATCCAGTTTTTGGGTAAGAAGAAGAAATCCTCCAAGAAGAGTAGTTTTTCAGCCATGTCAACATTTAGTGCCCTTGATGACGAGAAAGATACAATTGATAATGAGATCAAGGTTGATGAAGAGATCAACGATGAGCCTATCATTGCATTTACAGGTAAGAAGAAGTCATCAAAGGGTGGTAAGAAGAGTGGGAATGCATTTTCAGGTTTTAATGGTCTTGATTATGAGAATGAGGACAAAGATGATGATAAGGATGAGGATGAAGATATTGCGACGATTAGTTTCTCTGGTAAGAAAAAGAAGTCATCTAAGGGTTCAAAGAAAAGTGGCAATTCGCATAGTGCTACCCTTGCTGATGAGGATAATGACGGTGATGTTTCTATTCGAGAGCCAAATAAATTAGACAATGATGGTATTGATGAAGATGATGCCAATGCTATTGCATTTTCGGGAAAGAAAAAGTCCTCCAAGAAAAAGAGCAGCAGTACCTTTACAACATTTAGTGATGAACATGTGCTGGACAATGAAGTTAGAGATGTAGTGGCACCTGAAATACTTAATACAACTAGTAGCAATTTTGATTCTGATTTATCGAAAGCTAATAAGATGGAGGGGGTGGTTGAAACTTCGAAAAATAAAAAGAAAAAGAAGAAGAGCGGTAGAACTGCTCAAGAAGAAGATGATTTAGATAAGATTCTTGCTGAGCTAGGAGAAATGCCTACTATATCAAAACCAGTTGACCCACCTCTTTCATCTCAAGAGGCCAAAGTTAAGAATCCATCTGAGCTTATAGCTCATCTTGATGCACCAGTTGAAAAGGAAGCTGAAGAAGATAACATAGAATCAGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAGGAGAAAAAGGCTGCAGCTGCAGCGACAGTAGCATCTGAAAGGAATTATGAGAAGATTGAAGAGGTACAAACTGAAATTGTAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCAAGAGAAGAAAGTGCCTAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGGAGAAAAGAAGAAGAAGAGAGAAGGAAAAGGGAAGAAGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGGCTTAGGCAAGAAGAGCTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAAGAAAAAGGAAAGAGAAAAAGAGAAGCTCCTAAAGAAGAAACAAGAAGGAAAGCTGTTAACTGGGAAACAAAAGGAAGAACAAAGGAGGTTGGAGGCAATGAGAAACCAAATATTAGCTAGTGCAGGGGGTTTACCTGTGTCTACGTCTGATCCCAGTGCACCAACCAAAAGACCTAAATACCAGACCAAGAAGTCAAAACCAGCCCATCATCAAACTAATGGCACTGTCCAAACTAAGGTAGTGGAACATAAAGAAGAAAAGATGGAAGAAAAAGTACAAGAAAAAGGTATGGCAGAGACTGAAATATTGGAGTCGGGGCAGATTGAATCTGTTGAGTCAATGCACGTAGAGGAAAAATCAGATGTTACTGAGGCTACTGAAGGTCATGAAATTCAAGAAGATGAAGATGAAGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTTGTTGATGAGGAGCTTGAATCAGAACCTGAGAATGATGTGAAAAAAGATATCAAGAATGGTGCACCAACTTCACATGATGCAGGTGTCAAGCTTGAAAACAAAAAGAAGCAGCCTGAGGTTGAGGTTGTTGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAGAAATTTCAACATCAGATGCTACTTCCAAACAACCGGAAGAAAATCTTCGCTCACCTATCTGTTGTATTATGGGCCATGTCGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATCACTCAGCAGATTGGGGCAACATATTTTCCTGCTGAGAACATTCGCGAAAGAACAAGAGAACTGAAAGCTGATGCAAAGCTGAAGGTTCCGGGCCTTCTTATTATTGATACCCCTGGGCACGAATCATTTACAAACTTACGTTCTCGTGGTTCAGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGGTTAGAACCACAAACGATAGAATCTCTTAATCTTTTGAGGATGAGAAACACAGAATTTATTGTTGCTCTGAATAAGGTTGATAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATACTTAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATGAGTTCAATAGGAGGCTTATTCAGATTATCACTGAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGATATGTTATTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGCAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTGTGTGGCATGCAGGGCCCTATTGTTACTACCATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGAGTAAAGGGAACATATCTGCATCATAAGAAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTTGAGCATGCTATTGCTGGAACAAGTCTTCACGTGGTAGGTCCTGAGGACGACTTGGAAGACATTAAGGATTCGGCTATGGAAGATATGAAGTCAGTCATGAGCAGGATAGACAGGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCTTTGTTAGAGTTTTTGAAGTCCCCGGCCGTGAGCATTCCTGTTAGTGGAATAAGTATAGGGCCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAGTATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCAGATGAGCTTGGTGTGAAGATTTTTATTGCCGATATCATTTATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTCTTTCCCTGTGTTCTCAGAATTTTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTCGATGTAATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTCTTCCTACAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGACGATTGCCATTAAGATAGTTGGGCACTCTTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGACTTGGAGGATGAACTTGTCAGCCATATATCAAGAAAGTCCATTGACTTACTCAAAGCCAATTATCGGGATGATTTGTCGACGGAGGAGTGGAGGCTGGTGGTGAAATTGAAGAACCTTTTCAAGATACAATGA 4059 40.9 MGRKKSTARDDDNAPATAHGGGKSKKKTFAVDDDEYSFGTERSEEAPSQEEKVVITGKKKGKKGNSKASQVEEEDVDDGDGVSEIVITEKKGKSKKGGGSSAFTASSFDFLEEGEDGVDNGDDESVLTTERDDNEADDFAIQFLGKKKKSSKKSSFSAMSTFSALDDEKDTIDNEIKVDEEINDEPIIAFTGKKKSSKGGKKSGNAFSGFNGLDYENEDKDDDKDEDEDIATISFSGKKKKSSKGSKKSGNSHSATLADEDNDGDVSIREPNKLDNDGIDEDDANAIAFSGKKKSSKKKSSSTFTTFSDEHVLDNEVRDVVAPEILNTTSSNFDSDLSKANKMEGVVETSKNKKKKKKSGRTAQEEDDLDKILAELGEMPTISKPVDPPLSSQEAKVKNPSELIAHLDAPVEKEAEEDNIESAAARKKKKKKEKEKEKKAAAAATVASERNYEKIEEVQTEIVEPKKGAAKSKVQEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERLRQEELERQAEEAKRKKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILASAGGLPVSTSDPSAPTKRPKYQTKKSKPAHHQTNGTVQTKVVEHKEEKMEEKVQEKGMAETEILESGQIESVESMHVEEKSDVTEATEGHEIQEDEDEDEWDAKSWDDAVVDLSLKSSFVDEELESEPENDVKKDIKNGAPTSHDAGVKLENKKKQPEVEVVDKGKRKDDAVKKEISTSDATSKQPEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNRRLIQIITEFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTQKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKKIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVMSRIDRTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLRILPNCIFNKKDPIVLGVDVIEGIAKVGTPICLPTREFIDIGRIASIENNHKPVDYAKKGQTIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTEEWRLVVKLKNLFKIQ 1352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4045105 4060512 + Sed0008952.1 Sed10g0612 727116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0612 1352 MobiDBLite consensus disorder prediction 146 309 - -
Sed10g0612 1352 Gene3D - 1102 1208 IPR036925 -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 450 563 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 610 629 - -
Sed10g0612 1352 Coils Coil 1197 1217 - -
Sed10g0612 1352 Coils Coil 612 632 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 166 188 - -
Sed10g0612 1352 Gene3D - 754 982 IPR027417 -
Sed10g0612 1352 Gene3D Translation factors 1215 1352 - -
Sed10g0612 1352 Pfam Elongation factor Tu GTP binding domain 763 972 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g0612 1352 CDD IF2_aeIF5B_IV 1223 1318 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 25 58 - -
Sed10g0612 1352 NCBIfam small GTP-binding protein domain 765 890 IPR005225 GO:0005525(InterPro)
Sed10g0612 1352 MobiDBLite consensus disorder prediction 691 758 - -
Sed10g0612 1352 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1085 1214 IPR036925 -
Sed10g0612 1352 FunFam Eukaryotic translation initiation factor 5B 1102 1208 - -
Sed10g0612 1352 FunFam eukaryotic translation initiation factor 5B 983 1102 - -
Sed10g0612 1352 FunFam Eukaryotic translation initiation factor 5B 754 982 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 717 751 - -
Sed10g0612 1352 PRINTS GTP-binding elongation factor signature 764 777 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g0612 1352 PRINTS GTP-binding elongation factor signature 828 838 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g0612 1352 PRINTS GTP-binding elongation factor signature 844 855 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g0612 1352 PRINTS GTP-binding elongation factor signature 880 889 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g0612 1352 MobiDBLite consensus disorder prediction 642 658 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 659 673 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 691 710 - -
Sed10g0612 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 759 1051 IPR027417 -
Sed10g0612 1352 Gene3D Translation factors 983 1101 - -
Sed10g0612 1352 Pfam Elongation factor Tu domain 4 1222 1295 IPR029459 -
Sed10g0612 1352 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 760 976 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed10g0612 1352 MobiDBLite consensus disorder prediction 1 134 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 328 368 - -
Sed10g0612 1352 SUPERFAMILY Translation proteins 1219 1351 IPR009000 -
Sed10g0612 1352 Pfam Translation-initiation factor 2 1089 1201 IPR023115 -
Sed10g0612 1352 CDD IF2_eIF5B 763 973 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 572 589 - -
Sed10g0612 1352 CDD aeIF5B_II 984 1094 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 258 280 - -
Sed10g0612 1352 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 417 1351 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
Sed10g0612 1352 Coils Coil 479 546 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 407 428 - -
Sed10g0612 1352 FunFam Eukaryotic translation initiation factor 5B 1215 1352 - -
Sed10g0612 1352 Coils Coil 413 444 - -
Sed10g0612 1352 MobiDBLite consensus disorder prediction 380 673 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2567 Sed-Chr3:41044181 Sed10g0612 Sed-Chr10:4045105 0.00E+00 dispersed
Sed07g1573 Sed-Chr7:12517238 Sed10g0612 Sed-Chr10:4045105 2.80E-32 dispersed
Sed10g0612 Sed-Chr10:4045105 Sed10g2107 Sed-Chr10:37565286 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0612 K03243 - mdm:103425307 1460.28