Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g0618 | ATGGAAATTCTCGACGCCATGGTCCTCGTCTTCGCCTTCCTTTTCTTCTCGATATGGTGGCGGTACTGGTCGGCCACGGGCGGGGGCTCGAGGAACCTCCCGCCGGGGCCGCCGGGCTGGCCGATCGTTGGGAACCTAATACAAGTCATCCTCCAGCGCCGCCCATTCATCTTCGTAGCGCGCGATTTGCGTGAAAAATATGGACCCATATTCACCATGCAAATGGGGCAACGCACGCTCATTATCGTGTCCAGCGCTGAACTGATCCATGAAGCTCTTGTGCAACGTGGTCCCTTATTTGCCAGCCGCCCTGCTGATTCCCCCATCCGTCTAGTCTTCAGTGTTGGTAAATGTGCGGTGAACTCCGCGGAGTACGGCCCACTGTGGCGAACCCTCCGGCGCAACTTCGTGACGGAGCTGATAAACCCGACGAGAATCAAGCAGTGCAGCTGGATACGGAAATGGGCAGTGGAGAGGCATCTGGAAAGGCTAAGGAAAGAAAATGCGGAGAAAGGATTCGTGGAGGTTATGAACAACTGCCGGCTCTCGGTGTGCAGCATTTTGATCTGCATATGCTTCGGCGCCAAAATCCCCGAACAAGAGATCAAGGTTATAGAGAGCATACTAAAGGACGTGATGCTGATCACGCTGCCGAAGCTTCCCGACTTCCTCCCGATCTTGACGCCGTTGTTTCGGAGGCAGCTGAAGCAGGCGAAGGAGCTGAGGAGGAAGCAGTTGGAGTGTTTGGTTCCGTTGATAAGGAGGAGGAGGTTGTTTGTGGAGAGGGATGGGGATGAGAGTGTGCGGGAGGAGTTGCCCGAGATGGCCAGTCCTATTGGGGCCGCGTATCTCGATTCGCTGTTCGGGCTGGAGACGCCCGGGCGGGGGCGTTTGGGAGAGGAGGAGCTTGTTACACTGTGTTCGGAGGTTATTAATGCTGGAACTGATACTAGTGCTACTGCTTTGGAGTGGGCTTTGCTTCATTTGGTGCAGGATCAAGAGATTCAAGAAAGATTGTATAAGGAAATTGTTGGCGTTGTGGGTAAAGATGGGGAGGTAACCGAAAGCGACACAGAGAAAATGCCATTTCTAGGAGCAGTGGTAAAAGAGACATTCCGGAGACACCCACCCAGCCATTTCTTACTATCCCACGCGGCCACGAAAGAGACCGAGCTCGGCGGCTACACGATCCCGGCCGACGCGAGCGTGGAGTTCTACACAGCCCATTTGTCCGACGACCCGAACACTTGGGAAGAACCGGGTTCCTTCCGACCCGAAAGGTTCTTGGAGGGCGATGGCATTGGCGTCGACGTGACCGGAACTAAGGCTGTCAAGATGGTGCCGTTCGGGGCAGGAAGGCGGATCTGCCCGGCCATGACTTTGGGCACGTTGCATGTGCACATGATGCTGGCGAGAATGGTCCATGCATTCAAGTGGGTCCCGGTTCCCGGGTCCCCGCCCGACCCGACCGCCACGTTTGCTTTTACAGTGATTATGAAGAATCCTCTCAAGGCTGTCATTTTGGACAGGTCCATTTTATAA | 1542 | 55.19 | MEILDAMVLVFAFLFFSIWWRYWSATGGGSRNLPPGPPGWPIVGNLIQVILQRRPFIFVARDLREKYGPIFTMQMGQRTLIIVSSAELIHEALVQRGPLFASRPADSPIRLVFSVGKCAVNSAEYGPLWRTLRRNFVTELINPTRIKQCSWIRKWAVERHLERLRKENAEKGFVEVMNNCRLSVCSILICICFGAKIPEQEIKVIESILKDVMLITLPKLPDFLPILTPLFRRQLKQAKELRRKQLECLVPLIRRRRLFVERDGDESVREELPEMASPIGAAYLDSLFGLETPGRGRLGEEELVTLCSEVINAGTDTSATALEWALLHLVQDQEIQERLYKEIVGVVGKDGEVTESDTEKMPFLGAVVKETFRRHPPSHFLLSHAATKETELGGYTIPADASVEFYTAHLSDDPNTWEEPGSFRPERFLEGDGIGVDVTGTKAVKMVPFGAGRRICPAMTLGTLHVHMMLARMVHAFKWVPVPGSPPDPTATFAFTVIMKNPLKAVILDRSIL | 513 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 4117234 | 4120422 | - | Sed0016195.1 | Sed10g0618 | 727122 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g0618 | 513 | CDD | CYP77_89 | 66 | 504 | - | - | |
| Sed10g0618 | 513 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 449 | 458 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed10g0618 | 513 | Pfam | Cytochrome P450 | 34 | 500 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | Gene3D | Cytochrome P450 | 29 | 512 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | P450 superfamily signature | 366 | 377 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | P450 superfamily signature | 313 | 330 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | P450 superfamily signature | 447 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | E-class P450 group I signature | 302 | 319 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | E-class P450 group I signature | 365 | 383 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | E-class P450 group I signature | 406 | 430 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | E-class P450 group I signature | 88 | 109 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | E-class P450 group I signature | 456 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | E-class P450 group I signature | 183 | 201 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | E-class P450 group I signature | 446 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PRINTS | E-class P450 group I signature | 322 | 348 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | FunFam | Cytochrome P450 family protein | 28 | 512 | - | - | |
| Sed10g0618 | 513 | SUPERFAMILY | Cytochrome P450 | 34 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0618 | 513 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 13 | 507 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0598 | Sed-Chr3:3621274 | Sed10g0618 | Sed-Chr10:4117234 | 3.10E-126 | dispersed | |
| Sed03g0600 | Sed-Chr3:3630554 | Sed10g0618 | Sed-Chr10:4117234 | 1.30E-94 | dispersed | |
| Sed10g0618 | Sed-Chr10:4117234 | Sed12g1818 | Sed-Chr12:29404566 | 4.60E-77 | dispersed | |
| Sed10g0618 | Sed-Chr10:4117234 | Sed01g0369 | Sed-Chr1:2816392 | 3.40E-96 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g0618 | K21995 | - | csv:101216852 | 976.852 |