Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0619 ATGATCTCTTCCCTAAAGCTCACTTTTTCCAATTTCACTTCCTCTAAACAATTCATCAGAAAATCTCCAATTCCAAATCCACCCACACAATCCCAAATCCACAGCACCCTCAATCATCACCGTCGATCTCTTTCACTAAACAAACCACTCCACATCTCGTCCGTTGATGATCTTTCACTACCCACAAAATCATCTCATCGTTGTACAGAATGCAGGGCCTACGAGGCCGAATCGAGGCCGATCCAGATCAACGTCGATTTTGTTGACGAGCAAATGGCTCAGAAGCTCAAAATTGGGCTCTATTTCGCCACTTGGTGGGCTTTGAATGTTGTGTTCAATGTCTACAACAAGAAGGTGCTTAATGCTTTCCCTTATCCTTGGCTCACCTCCACGCTTTCGCTCGCCGCGGGCTCGATCATGATGCTCGTTTCCTGGACCGCTCGGATTGTGGATGCTCCCAAAACTGATTTGGATTTCTGGAAATCCCTGTTTCCGGTTGCAGTGGCGCATACAATTGGGCATGTTGCAGCAACAGTGAGTATGTCCAAAGTGGCAGTCTCATTTACACACATAATCAAGAGTGGGGAACCAGCTTTCAGTGTGTTGGTTTCAAGGTTTCTGTTGGGTGACATGTTTCCATTGCCAGTTTACTTATCTCTTATCCCAATCATAGGCGGCTGTGCTCTATCCGCCATGACCGAGCTCAATTTCAACATGATCGGTTTCATGGGAGCAATGATATCAAACATGGCATTTGTGTTTAGAAACATATTCTCAAAGAAAGGAATGAAGGGGAAGTCAGTGAGTGGGATGAATTACTATGCTTGTCTCTCATTGCTGTCTCTTTTCATTCTTACTCCTTTTGCCATTGCTGTTGAGGGACCCAAGTTGTGGGCTGAAGGATTTCAAAAAGCACTTTCTCAAATTGGTCCCAATTTCATTTGGTGGTTAGGAGCTCAAAGTATGTTCTATCACTTGTACAACCAAGTGTCTTACATGTCACTTGATCAGATATCTCCATTGACGTTCAGCGTAGGAAACACGATGAAGAGAATATTCGTGATCGTGTCGTCGATTTTCATCTTTCACACGCCCGTCCGGCCGGTCAACGCCATTGGAGCTGCCATTGCAATCCTCGGAACATTCCTCTACTCCCAGGCCAAGTTGTGA 1170 45.3 MISSLKLTFSNFTSSKQFIRKSPIPNPPTQSQIHSTLNHHRRSLSLNKPLHISSVDDLSLPTKSSHRCTECRAYEAESRPIQINVDFVDEQMAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSIMMLVSWTARIVDAPKTDLDFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGDMFPLPVYLSLIPIIGGCALSAMTELNFNMIGFMGAMISNMAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLFILTPFAIAVEGPKLWAEGFQKALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIFIFHTPVRPVNAIGAAIAILGTFLYSQAKL 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4127415 4129913 - Sed0022113.1 Sed10g0619 727123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0619 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 289 386 - -
Sed10g0619 389 PANTHER SOLUTE CARRIER FAMILY 35 94 388 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Sed10g0619 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 139 232 - -
Sed10g0619 389 Pfam Triose-phosphate Transporter family 96 385 IPR004853 -
Sed10g0619 389 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 96 388 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2664 Sed-Chr7:42095070 Sed10g0619 Sed-Chr10:4127415 4.80E-151 dispersed
Sed10g0285 Sed-Chr10:1688906 Sed10g0619 Sed-Chr10:4127415 3.40E-59 dispersed
Sed10g0619 Sed-Chr10:4127415 Sed12g0279 Sed-Chr12:1599613 1.20E-85 dispersed
Sed10g0619 Sed-Chr10:4127415 Sed04g3192 Sed-Chr4:42612918 1.80E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0619 K15283 - csv:101216621 640.573