Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0620 ATGTTCGATCCAGACATGTTTGATAATCACCATAATCATATACTCGACATGGGATTTAGCACATCCGAAAACGAGTTGGAAAATGTGAGAGATGATGATTTGGAGGGAAAATCAGTGGCGGAAATGTTAGAAGCAGCGTGTGCGAGCGATCAACAACGCAACAAAAAGAAGCGTTACAATCGACATACTCAGCACCAAATCCAAGAAATGGAAGCATTCTTTAAGGAATGTCCTCATCCAGATGACAAGCAAAGAATGGACTTGAGCCGCGAGCTGGGGTTGGAGCCTTTGCAAGTCAAGTTTTGGTTTCAAAACAAACGCACCCAAATGAAGGCTCAACATGAAAGACATGAAAATGCGATATTGAAGGCAGAAAATGAAAAGCTTCGAGCGGAGAATGTTCGGTTTCGAGAAGCGTTTGCCCATTCAACCTGCCCCAACTGCAGATCCTCTACAGCCCTCGGAGAAATGTCCTTCGAAGATCAACATTTGCGTATTGAAAACTCGCGTTTGCGAGATGAGATCGACCGAATGAGTGGATATGGCACAAAATGCGCAAAGCCACTGCCTTCTCCATACTATCACCTTCCCTCGAACCCTTCCACCCGATCTCTTGACATAGGCATCACAAACTTCGGTCAGCCTTCGGGTTTCGTCGGGGAAAAGTACGGAGCAGCCGACTTCCTGCGGTCCATTTCGAGACCTTCGGAAGCCGACAAGCCGGTGATCATCGAGCTTGCGGTCTCGGCCATGGATGAGTTGACCCGAATGGCTCAGGTGGGCGAACCGTTGTGGGTTCCGGCTCATGATAACAAGTCTACCGAGCTGATGCTTAATGAAGCCGAGTATTTGACCACGTTTGGAGGCGGAATTGGGCCTAAATTGTTGGGCCTGAGAACTGAAGCTTCACGAGTTTCCGCTATTGTGTTCATGAACTACATTAAGCTTGTGGATATTTTTATGGATGCTACGCAATGGTCGACTGTGTTTTGTGGGATTGTTTCTAGAGCTTCGACTGTGGAAGTTCTTTCAGCTGGCCTACCTGGAAATTGCAACGGGGCTTTACACGTGATGAGCGCAGAATTCCAAGTCCTATCGCCGCTCGTGCCGACACGCGAAAACTACTTCGTAAGATACTGCAAACAGCACGGCGACGGGACGTGGGCGGTGGTGGATGTGTCATTGGACTCATTGCGGCACTCTGGCCTCCCAAAGACCCGTAGAAGACCCTCTGGTTGTTTAATCCAAGAACTACCCAACGGCTATTCGAAGATCACTTGGGTTGAACATGTTGAGGTTGATGAAACTGGCGTGCCCACTATGTATAGACCGCTCGTAAATTCGGGGCTTGCTTTTGGCGCAAAACGATGGGTGGCCACTCTTGATAGGCAGTGTGAACGTTTGGCCACTTCATTGGCCACCACCATTCCAACGGCCGAATTAAGTGTGATATCGAGTATTGAAGGAAGGAAGAGTATGCTGAAGCTAGCAGAAAGAATGGTGGCGAGCTTTTGCGCCGGCGTTGGCGCATCGAGTGTGCACGCCTGGACGGCATTGCCAGCAGGCGGCAGCGATGATGTTCGGGTCGTGACGAGGAAGAGCACCGACGAACCTGGCCGACCACCTGGTGTTGTGCTTAGCGCCGCCACTTCTTTTTGGATCCCTGTTCTTCCTAAGGTTGTCTTTGATTTCCTAAGAAAAGAAAAATCTCGAAGCGAGTGGGATATTTTGTCGAATGGGGGCTTGGTACAAGAAATGGCGCATATAGCCAATGGCCGCCACTCTGGGAATTGCGTCAATTTGCTTCGTGTCAATAGTGCAAATTCTAGCCAGAGCAACATGTTGATTCTACAAGAGAGTTGCACGGATTCCACGGGATCGTACGTTATTTATGCTCCGGTTGACACGGTTGCGATGAATGTGGTCCTCAGCGGTTGCGATCCGGATTACGTGGCGCTTCTACCGTCGGGATTCGCCATACTTCCCGACGGACCAGGTGGAGCCAACAGCGGGGGAATTCTAGAGTTGGGCTCCGGTGGGTCAGTTATTACGGTTGCATTTCAAATCCTGGTCGATTCAGTTCCAACGGCTAGACTCTCAATTGGATCAGTTGCAACCGTTAGTAGTTTGATTAAATGCACGGTTGAGAGGATCAGAGCTGCTGTGATGCGTGAAAATCCATGA 2184 49.54 MFDPDMFDNHHNHILDMGFSTSENELENVRDDDLEGKSVAEMLEAACASDQQRNKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMDLSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENVRFREAFAHSTCPNCRSSTALGEMSFEDQHLRIENSRLRDEIDRMSGYGTKCAKPLPSPYYHLPSNPSTRSLDIGITNFGQPSGFVGEKYGAADFLRSISRPSEADKPVIIELAVSAMDELTRMAQVGEPLWVPAHDNKSTELMLNEAEYLTTFGGGIGPKLLGLRTEASRVSAIVFMNYIKLVDIFMDATQWSTVFCGIVSRASTVEVLSAGLPGNCNGALHVMSAEFQVLSPLVPTRENYFVRYCKQHGDGTWAVVDVSLDSLRHSGLPKTRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVATLDRQCERLATSLATTIPTAELSVISSIEGRKSMLKLAERMVASFCAGVGASSVHAWTALPAGGSDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVLPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVNLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGANSGGILELGSGGSVITVAFQILVDSVPTARLSIGSVATVSSLIKCTVERIRAAVMRENP 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4136562 4143864 - Sed0014068.1 Sed10g0620 727124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0620 727 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677(InterPro)
Sed10g0620 727 FunFam Homeobox-leucine zipper protein HDG1 44 129 - -
Sed10g0620 727 SUPERFAMILY Homeodomain-like 45 113 IPR009057 -
Sed10g0620 727 Gene3D - 246 470 IPR023393 -
Sed10g0620 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 49 722 IPR042160 -
Sed10g0620 727 SUPERFAMILY Bet v1-like 489 718 - -
Sed10g0620 727 CDD START_ArGLABRA2_like 240 466 - -
Sed10g0620 727 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed10g0620 727 Gene3D - 42 129 - -
Sed10g0620 727 FunFam Homeobox-leucine zipper protein GLABRA 2 245 466 - -
Sed10g0620 727 Coils Coil 107 139 - -
Sed10g0620 727 ProSiteProfiles START domain profile. 236 470 IPR002913 GO:0008289(InterPro)
Sed10g0620 727 CDD homeodomain 55 114 IPR001356 GO:0003677(InterPro)
Sed10g0620 727 SMART START_1 245 467 IPR002913 GO:0008289(InterPro)
Sed10g0620 727 SMART HOX_1 54 117 IPR001356 GO:0003677(InterPro)
Sed10g0620 727 Pfam START domain 246 467 IPR002913 GO:0008289(InterPro)
Sed10g0620 727 Pfam Homeodomain 56 111 IPR001356 GO:0003677(InterPro)
Sed10g0620 727 SUPERFAMILY Bet v1-like 238 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3070 Sed-Chr5:40988413 Sed10g0620 Sed-Chr10:4136562 3.10E-268 dispersed
Sed05g3071 Sed-Chr5:40989071 Sed10g0620 Sed-Chr10:4136562 4.00E-221 dispersed
Sed09g1578 Sed-Chr9:39336227 Sed10g0620 Sed-Chr10:4136562 3.90E-71 dispersed
Sed09g1579 Sed-Chr9:39336503 Sed10g0620 Sed-Chr10:4136562 6.00E-116 dispersed
Sed10g0620 Sed-Chr10:4136562 Sed13g0162 Sed-Chr13:1025312 2.20E-173 dispersed
Sed01g1457 Sed-Chr1:10671656 Sed10g0620 Sed-Chr10:4136562 9.50E-270 wgd
Sed10g0620 Sed-Chr10:4136562 Sed14g1359 Sed-Chr14:22405122 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39722 PF01852 START 4.90E-51 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0620 K09338 - csv:101209093 1228.39