Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0626 ATGGTTTCTTCCCAAGTAGACTTTGCAAAATCCTTATGCTCAGATTCCGGAAACTACACAACCAATTCCACTTACAAAGCAAACCTCCAAATTCTACTTTCTTCCATCCCCACCCGACCCCAACTACTAACCTTCGGCTTCCACACACTCTCGGTCGGCCGAGAAGTCTACGCGGCCGCCCTCTGCCGCGGAGACCTCTCCGCCGACATATGCAAAACATGCATCGACTACACCACACGCAAAATCACACAGCTCTGTCCCAACCAAAAGACCGCAATCGTGTGGTACAATCAATGCATGCTTCGGTACTCGGACACCAAAATTCTAGGTCTCCTCAACAACATGGATTCGGAGTCCATTTTCAACGGCCGAAAGGCGTGGAACCCTAGCGAGTTCCTCAAGGCGGTTCAGAGTCTGATGGACCGGTTGAGACGAGAGGCCGCGTCGGGTAATTCCACGCGGAAATTCGCCACGGGGTCAAGTGTCGCGGGGAATGAAACGGTGTACGGGCTCGTGCAGTGCACTCCGGATTTGACGTCGGAGGATTGCAACAAGTGTGTGGGTGAGCGTGGTGTGTTGATTAATGAGGCTAGCATTGGGGCTAGGATATTTACAGCCTCTTGTGTTTTGAGATATGAAAATTATCTTTTCTTTACTCTCCCGCCTAATAACTCCACTCACTTCTCCCCGTCTTTGCCGCCGTCTCCGCGGCCAACAGCCGTGCCTGCAGCTAATGGTAAAAGCAAACGCAAAACTACTAAGGTCATAATCATCGTTGTATCAATTATTTCTGCAATTATACTCGTTATTTGCATTTGCTTCATTTTACGAGTGAAAATCTCAAGACACAAAAAATCATCCGAAGCTGAAAGCGTGGGCTTCCAAGAAGAAGCAGAGGAAATTAGTAGCTTGGAAACGACTCAATTTGATTTCGACACAATCAAAGTTGCAACAAATGAGTTCTCGAACGAAAATAAGCTAGGAGAAGGAGGATTTGGAGCTGTCTACAAGGGAAGTTTATCAAATGGGCAAAAGATAGCAGTGAAGAGGCTTTCAAGGAATTCAGGACAAGGAAGTGAGGAGTTCAAAAATGAAGTGCTTGTGATGGTAAAACTTCAGCACAGAAACTTAGTTAGGCTGCTTGGATTTTGCTTGGAGGGAAATGAAAGACTTCTCATCTATGAGTTTCTACAAAATGCCAGCCTTGATCACTTCCTATTTGATCTTGTCAAACGGGCACTTTTGGATTGGGAAAAACGGTTTAAAATTATAACTGGCATTGCTCGAGGGCTACTATACCTTCATGAAGATTCTCGGATTCGAATAATTCATCGTGATCTTAAAGCCAGCAATGTTTTGTTGGATGGAGAAATGAATCCCAAGATTTCAGACTTTGGCATGGCAAGATTGTTTGCATTGGATGAAACTCGAGGTCAAACTAATAGAATTGTTGGAACTTATGGATATATGGCTCCGGAATATGCATATCATGGACAGTTCTCAATAAAATCAGATGTATTCAGCTTTGGTGTATTAATGCTTGAGATTATAAGTGGTCAAAAAAATAATTGTCGCGCAGGAGAGATTGATGAATATCTTGTTAGCTTTGCCTGGAAAAAGTGGAGGGAAGGAACACCTGAAAATGTTATAGATGCAATGCTCCGTTCGGGCTCGAACATGGAAATGATAAGATGCATTCACATTGGATTACTGTGTGTTCAAGAAAACCCAACAGATCGACCAACCATGGCTTCTGTGGTTTTAATGCTAAACAGTTTCTCTCTCACTCTCGCGCTCCCCTCTCGACCTGCCTTCTCTCTCGAGAGCAACAACATTCCGTCGAATGAAAATCGGCATTCCTCAACTGCTCATCTTCAAGCTTCAGAAAATGTAGCTTCCATTTCTGAATTCTATCCACGCTAG 1923 44.36 MVSSQVDFAKSLCSDSGNYTTNSTYKANLQILLSSIPTRPQLLTFGFHTLSVGREVYAAALCRGDLSADICKTCIDYTTRKITQLCPNQKTAIVWYNQCMLRYSDTKILGLLNNMDSESIFNGRKAWNPSEFLKAVQSLMDRLRREAASGNSTRKFATGSSVAGNETVYGLVQCTPDLTSEDCNKCVGERGVLINEASIGARIFTASCVLRYENYLFFTLPPNNSTHFSPSLPPSPRPTAVPAANGKSKRKTTKVIIIVVSIISAIILVICICFILRVKISRHKKSSEAESVGFQEEAEEISSLETTQFDFDTIKVATNEFSNENKLGEGGFGAVYKGSLSNGQKIAVKRLSRNSGQGSEEFKNEVLVMVKLQHRNLVRLLGFCLEGNERLLIYEFLQNASLDHFLFDLVKRALLDWEKRFKIITGIARGLLYLHEDSRIRIIHRDLKASNVLLDGEMNPKISDFGMARLFALDETRGQTNRIVGTYGYMAPEYAYHGQFSIKSDVFSFGVLMLEIISGQKNNCRAGEIDEYLVSFAWKKWREGTPENVIDAMLRSGSNMEMIRCIHIGLLCVQENPTDRPTMASVVLMLNSFSLTLALPSRPAFSLESNNIPSNENRHSSTAHLQASENVASISEFYPR 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4209768 4214564 + Sed0003484.1 Sed10g0626 727130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0626 640 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524(InterPro)
Sed10g0626 640 Gene3D Phosphorylase Kinase; domain 1 294 396 - -
Sed10g0626 640 FunFam Cysteine-rich receptor-like protein kinase 10 281 396 - -
Sed10g0626 640 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 97 605 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed10g0626 640 SMART serkin_6 321 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0626 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0626 640 ProSiteProfiles Gnk2-homologous domain profile. 114 217 IPR002902 -
Sed10g0626 640 SUPERFAMILY Protein kinase-like (PK-like) 307 616 IPR011009 -
Sed10g0626 640 Pfam Protein tyrosine and serine/threonine kinase 324 587 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0626 640 FunFam Cysteine-rich receptor-like protein kinase 28 397 598 - -
Sed10g0626 640 Gene3D Transferase(Phosphotransferase) domain 1 397 598 - -
Sed10g0626 640 CDD STKc_IRAK 327 591 - -
Sed10g0626 640 ProSiteProfiles Gnk2-homologous domain profile. 7 108 IPR002902 -
Sed10g0626 640 Gene3D - 115 217 IPR038408 -
Sed10g0626 640 Gene3D - 5 107 IPR038408 -
Sed10g0626 640 ProSiteProfiles Protein kinase domain profile. 321 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0626 640 Pfam Salt stress response/antifungal 13 105 IPR002902 -
Sed10g0626 640 Pfam Salt stress response/antifungal 128 215 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1998 Sed-Chr5:33293136 Sed10g0626 Sed-Chr10:4209768 2.80E-25 dispersed
Sed08g2340 Sed-Chr8:36741485 Sed10g0626 Sed-Chr10:4209768 3.00E-93 dispersed
Sed10g0366 Sed-Chr10:2211819 Sed10g0626 Sed-Chr10:4209768 6.40E-130 dispersed
Sed10g0367 Sed-Chr10:2218334 Sed10g0626 Sed-Chr10:4209768 1.60E-112 dispersed
Sed10g0626 Sed-Chr10:4209768 Sed14g1368 Sed-Chr14:22495961 9.80E-170 dispersed
Sed01g1432 Sed-Chr1:10547624 Sed10g0626 Sed-Chr10:4209768 1.30E-153 wgd
Sed10g0626 Sed-Chr10:4209768 Sed14g1367 Sed-Chr14:22489400 9.90E-130 wgd
Sed10g0626 Sed-Chr10:4209768 Sed08g2336 Sed-Chr8:36723894 9.50E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79829 PF07714 PK_Tyr_Ser-Thr 2.80E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0626 - - - 0.0